Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C08_e155_06.seq
         (1504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   5.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   5.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   6.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   6.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   6.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 240 RSPCERRTCAAASTRVPPCLSKRETDCI 157
           R   ER  C AA+ +VP     R  D I
Sbjct: 160 REATERNVCIAAAVKVPSAADDRMFDDI 187


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 240 RSPCERRTCAAASTRVPPCLSKRETDCI 157
           R   ER  C AA+ +VP     R  D I
Sbjct: 250 REATERNVCIAAAVKVPSAADDRMFDDI 277


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 68  HEGVKLIKEFGEERRAALVEASSLAKEG 151
           H+ ++L+  FGEE +A ++   SL   G
Sbjct: 347 HDQLRLVSRFGEE-KARMITTMSLLLPG 373


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 159 IFFPSFAREDASTSAARRSSPNSLISFTPSCRI 61
           +F+PSF          +R+  N+L+S + SC I
Sbjct: 222 LFWPSFNSAALEGDDQQRAIINTLLSISASCVI 254


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 68  HEGVKLIKEFGEERRAALVEASSLAKEG 151
           H+ ++L+  FGEE +A ++   SL   G
Sbjct: 347 HDQLRLVSRFGEE-KARMITTMSLLLPG 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,335
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52515375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)