Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C08_e155_06.seq
         (1504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containi...    36   0.091
At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi...    33   0.64 
At2g12110.1 68415.m01302 expressed protein similar to At2g16170,...    31   1.5  
At1g64100.1 68414.m07261 pentatricopeptide (PPR) repeat-containi...    29   6.0  

>At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 323

 Score = 35.5 bits (78), Expect = 0.091
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
 Frame = +2

Query: 131 SSLAKEGKKMQSVSL---LLKQGGTLVLAAAHVLLSQGDRKGAVKLL---EESEFRYRPG 292
           + L  EG+ +Q+++L   ++++G        + L   GD + A+ LL   EE+  +    
Sbjct: 18  NGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVV 77

Query: 293 VVGALCTLLCADNEYVKASQLFTDVY 370
           +  A+   LC D  ++ A  LFT+++
Sbjct: 78  IYNAIIDRLCKDGHHIHAQNLFTEMH 103


>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 534

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
 Frame = +2

Query: 131 SSLAKEGKKMQSVSL---LLKQG----GTLVLAAAHVLLSQGDRKGAVKLL---EESEFR 280
           + L +EG+ +Q+++L   ++++G            + +   GD   A+ +L   +ES+ +
Sbjct: 18  NGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIK 77

Query: 281 YRPGVVGALCTLLCADNEYVKASQLFTDVYQ 373
               +  A+   LC D  ++KA  +FT++++
Sbjct: 78  ANVVIYSAIVDRLCKDGNHIKAQNIFTEMHE 108


>At2g12110.1 68415.m01302 expressed protein similar to At2g16170,
           At2g06640, At2g12100, At3g42590, At2g05460
          Length = 231

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 209 AAHVLLSQGDRKGAVKLLEESEFRYRPGVVGALCTLLCADNEYVKASQLFTDVY---QHY 379
           A HVL+ + D  GA+KL++          +      +CA  +Y+    LF D+Y    H 
Sbjct: 98  AIHVLIHETDINGALKLMQRHAPVRADATIACAIIFICAGYDYM--GGLFLDLYTRNHHP 155

Query: 380 KDDQLFASLC 409
            D      LC
Sbjct: 156 LDSDFTRDLC 165


>At1g64100.1 68414.m07261 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 666

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 221 LLSQGDRKGAVKLLEESEFRY-RPGVV--GALCTLLCADNEYVKASQLFTDVYQHYKDDQ 391
           +   GD K A+ LL + E  + +P VV   A+   LC D  +  A  LF+++ +      
Sbjct: 271 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 330

Query: 392 LFASLC 409
           +F   C
Sbjct: 331 VFTYNC 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,654,659
Number of Sequences: 28952
Number of extensions: 241750
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4009654272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)