Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C04_e123_06.seq
         (1456 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   7.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   9.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   9.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +3

Query: 327 PIEKPPESQTRESYTSGDNVFQSGSENNISYHSEYGXSRYTGFGNTPKQSQSTPMTPIH- 503
           P++  P++ T   ++        G  + +S+      S  +  GNTP +S ++P  P H 
Sbjct: 25  PLDMKPDASTLGQFSP------QGPNSPVSFSMGGHGSLLSPSGNTPNKSSTSPYPPNHP 78

Query: 504 -SGNEVVDNTIATLATG 551
            SG++ + +     A+G
Sbjct: 79  LSGSKHLCSICGDRASG 95


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 46  KCRRSLGXSCSPG 8
           KC  SLG  C PG
Sbjct: 600 KCEYSLGEKCRPG 612


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 931 GNVPNDPEXAGHPPXWEXXPAV 866
           G +P  P  + HPP     PA+
Sbjct: 228 GLIPPHPGLSPHPPHLSSHPAI 249


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 931 GNVPNDPEXAGHPPXWEXXPAV 866
           G +P  P  + HPP     PA+
Sbjct: 120 GLIPPHPGLSPHPPHLSSHPAI 141


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,159
Number of Sequences: 336
Number of extensions: 4555
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 43428200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)