Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_C04_e123_06.seq
(1456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 58 4e-09
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 48 3e-06
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 46 1e-05
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 44 5e-05
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 41 4e-04
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 40 0.001
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 2.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 6.5
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 8.6
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 27 8.6
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 57.6 bits (133), Expect = 4e-09
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Frame = +3
Query: 144 LEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIAALAEGHSWSPSDYKP 323
++ M VGGN+ A+ F + P + A +I +KYNT A RQKI A +G W D +P
Sbjct: 67 VKMMEVGGNSNAKTFLSTDPMFSAAGSIREKYNTDIAEDLRQKIRAEVDGVEWVKVD-RP 125
Query: 324 EPIEKPPESQTRESYTSGDNVFQSGSENNISYHSEYGX--------------SRYTGFGN 461
+ + + + + +V E N Y ++ G RY GFG+
Sbjct: 126 KSVSSHASVTSSSTVPTIPSV---SKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182
Query: 462 TPKQSQSTPMTPIHSGNEVVD----NTIATLATGWSMFTSSVSKAARTATENAVR 614
+ S + + ++G +D N ++ L+ GW+MF+ SVS+ + + R
Sbjct: 183 S--NSVNPNSSARNNGGSFLDQLSSNPVSALSHGWNMFSRSVSQQIQDVQDPETR 235
Score = 50.8 bits (116), Expect = 5e-07
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKDIXIR 148
ICLDCSG HR LGV SF RS+TMD W + ++
Sbjct: 36 ICLDCSGQHRGLGVEKSFVRSITMDNWSERQVK 68
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
IC+ CSGVHRSLGVH+S +SV +D W D
Sbjct: 48 ICIRCSGVHRSLGVHVSRVKSVDLDSWTD 76
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 46.0 bits (104), Expect = 1e-05
Identities = 16/27 (59%), Positives = 24/27 (88%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKW 130
+C+DCSG+HRSLG H++ RS+T+DK+
Sbjct: 706 LCIDCSGIHRSLGTHITKIRSLTLDKF 732
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 44.0 bits (99), Expect = 5e-05
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = +2
Query: 38 TAFGI--CLDCSGVHRSLGVHLS---FXRSVTMDKWKDIXIR 148
T FGI CLDCS HR++GVH+S F RS +D W +R
Sbjct: 37 TTFGIYLCLDCSAAHRNMGVHISFVRFLRSTVLDSWTYAQLR 78
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 41.1 bits (92), Expect = 4e-04
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMD 124
+C++CSG+HRSLG H+S RS+ +D
Sbjct: 750 LCIECSGIHRSLGTHISKTRSLLLD 774
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 39.5 bits (88), Expect = 0.001
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKDIXIRE 151
+CL C+ +HR LG H+S +S+++D+W + I +
Sbjct: 42 LCLRCATIHRKLGTHVSKVKSISLDEWSNDQIEK 75
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.3 bits (60), Expect = 2.8
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Frame = +3
Query: 345 ESQTRESYTSGDNVFQSGSENNISYHSEYGXSRYTGFGNTPKQSQSTPMTPIHSGNE--- 515
+S +SGD + +IS S+ S YT N+ + S S P T S +
Sbjct: 728 QSSVSRPQSSGDASGFNTIFTSISQSSDGETSGYTISSNSSQNSASEPQTAFTSSSSSAT 787
Query: 516 --VVDNTIATLATGWSMFTSSVSK--AARTATENAVRYGGIASQKVSEMAS 656
+ ++I+T + S SS S ++ + T + IAS + + S
Sbjct: 788 PTITQSSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIPS 838
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 294 HSWSPSDYKPEPIEKPPESQTRESY---TSGDNVFQSGSENNISYHSEYG 434
H PS Y+ E E+P E + S+ +SG+N F+ E Y YG
Sbjct: 785 HETEPSHYEEEEEEEPEERREESSHFSESSGNNEFE---ETEQEYTHGYG 831
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 8.6
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Frame = +3
Query: 297 SWSPSDYKPEPIEKPPESQTRESYTSGDNVFQSGSENNISYHSEYGXSRYTGFGNTPKQS 476
S S S P PI S + + TSG+N+ + S G NT S
Sbjct: 127 SISNSSESPAPINSATASMSPANNTSGNNITSPNVRGELDMSGNIAMS--GGPTNTASTS 184
Query: 477 QSTP--MTPIHSGNEVVDNTIATLATGWSMFTSSVS-KAARTATENAVRYGGIASQKVSE 647
P MT + + N +++ + S T+S + + T T ++ + G + ++
Sbjct: 185 GPVPHDMTVLPQTDSNTSNLMSSGSQLGSFATASTNGNNSTTTTTSSAAHPGSFHKGTND 244
Query: 648 MASTV 662
+ST+
Sbjct: 245 YSSTL 249
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 525 NTIATLATGWSMFTSSV-SKAARTATENAVRYGGIASQKVSEMASTVTEKVXNS 683
N+ +L FTS+ S + T + VRY I S SE ST+T + +S
Sbjct: 2 NSYISLIFTLLFFTSAARSSSVSVETGSCVRYTTIYSSGSSEFTSTITPETPSS 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,003,244
Number of Sequences: 5004
Number of extensions: 71847
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 812755802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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