Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_C04_e123_06.seq
(1456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934 55 2e-07
10_08_1021 - 22315487-22315493,22317051-22317154,22317227-223173... 50 6e-06
03_06_0726 - 35761959-35762063,35762232-35762336,35762543-357626... 50 6e-06
02_01_0739 + 5505630-5505654,5505965-5506049,5506444-5506519,550... 50 6e-06
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 49 1e-05
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197... 48 1e-05
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759... 46 1e-04
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 44 3e-04
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 41 0.003
08_02_1409 - 26864544-26864658,26864787-26864916,26864953-268652... 38 0.020
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 31 2.3
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 31 3.0
10_05_0060 + 8682253-8682305,8682933-8683162,8684448-8684683,868... 31 3.0
06_01_0892 - 6827510-6827590,6829348-6830412 30 5.2
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 29 6.9
>03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934
Length = 453
Score = 54.8 bits (126), Expect = 2e-07
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKDIXIRE 151
+CL+CSG HR LGVH+SF RSVTMD W + +R+
Sbjct: 40 MCLECSGKHRGLGVHISFVRSVTMDSWTEAQLRK 73
Score = 46.0 bits (104), Expect = 7e-05
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +3
Query: 144 LEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIAALAEGHSW------- 302
L KM GGN + F ++ K + KYN+ AAA YR +I A+AEG W
Sbjct: 71 LRKMEAGGNDRLNAFLAARGVPKETPHVA-KYNSNAAAAYRDRIVAVAEGRPWTDPPVVK 129
Query: 303 -SPSDYKPEPIEKPP 344
+P P P KPP
Sbjct: 130 ETPGSGAPAPTRKPP 144
>10_08_1021 -
22315487-22315493,22317051-22317154,22317227-22317328,
22317623-22317745,22318038-22318094,22318498-22318758,
22318948-22319377,22320168-22320286,22320515-22320595
Length = 427
Score = 49.6 bits (113), Expect = 6e-06
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKW 130
+C+DCS VHRSLGVH+SF RS +D W
Sbjct: 48 LCIDCSAVHRSLGVHVSFVRSTNLDSW 74
Score = 37.9 bits (84), Expect = 0.020
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +3
Query: 144 LEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIA 278
L+ M+ GGN +AQ FF Q + G I KY ++AA +YRQ +A
Sbjct: 79 LKMMVYGGNNRAQAFF-KQHGWTDGGKIEAKYTSRAADLYRQLLA 122
>03_06_0726 -
35761959-35762063,35762232-35762336,35762543-35762665,
35763056-35763316,35763449-35763905,35764637-35764755,
35764851-35764919
Length = 412
Score = 49.6 bits (113), Expect = 6e-06
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKW 130
+CLDCS VHRSLGVH++F RS +D W
Sbjct: 44 LCLDCSAVHRSLGVHITFVRSTNLDSW 70
Score = 33.1 bits (72), Expect = 0.56
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 144 LEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQ 269
L+ M GGN +A FF Q + G + KY ++AA +YRQ
Sbjct: 75 LKMMAFGGNNRAHAFF-KQHGWTDGGKVDAKYTSRAAELYRQ 115
>02_01_0739 +
5505630-5505654,5505965-5506049,5506444-5506519,
5506694-5506857,5506878-5506935,5507283-5507399,
5507543-5507638,5507905-5508186
Length = 300
Score = 49.6 bits (113), Expect = 6e-06
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
ICL CSGVHRSLG H+S SVT+D+W D
Sbjct: 45 ICLKCSGVHRSLGTHISKVLSVTLDQWSD 73
>06_03_0723 +
23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 48.8 bits (111), Expect = 1e-05
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
ICL CSG+HRSLG H+S SVT+D+W D
Sbjct: 843 ICLKCSGIHRSLGTHISKVLSVTLDEWTD 871
>07_03_0910 -
22519006-22519159,22519300-22519355,22519433-22519702,
22519808-22519986,22520146-22520374,22520985-22521180,
22521728-22521818,22521921-22521975,22522812-22522902,
22523366-22523424,22524000-22524050
Length = 476
Score = 48.4 bits (110), Expect = 1e-05
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKW 130
IC+ CSG+HRSLGVH+S RS T+D W
Sbjct: 50 ICMQCSGIHRSLGVHISKVRSATLDTW 76
>01_07_0189 +
41875088-41875149,41875322-41875392,41875809-41875902,
41876285-41876360,41877130-41877293,41877428-41877605,
41877687-41877809,41877895-41877990,41878091-41878372
Length = 381
Score = 45.6 bits (103), Expect = 1e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
IC+ CSG HRSLGVH+S SV +D+W D
Sbjct: 84 ICIKCSGAHRSLGVHISKVVSVKLDEWTD 112
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 44.0 bits (99), Expect = 3e-04
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMD 124
+C++CSGVHR+LGVH+S RS+T+D
Sbjct: 444 LCIECSGVHRNLGVHISKVRSLTLD 468
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 40.7 bits (91), Expect = 0.003
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMD 124
IC++CSG HR+LGVH+S RS+ +D
Sbjct: 387 ICIECSGAHRNLGVHISKVRSLRLD 411
>08_02_1409 -
26864544-26864658,26864787-26864916,26864953-26865283,
26866507-26866626,26867489-26867821,26867915-26868001,
26868093-26868320,26868434-26868565,26868649-26868861,
26869376-26869417,26869829-26869894,26870230-26870274,
26870367-26870429,26870757-26870827,26871149-26871249,
26871458-26871534,26872415-26872459
Length = 732
Score = 37.9 bits (84), Expect = 0.020
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTM 121
+C++CSGVHR+LGVH+S S T+
Sbjct: 484 LCIECSGVHRNLGVHISKLISTTL 507
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 31.1 bits (67), Expect = 2.3
Identities = 19/64 (29%), Positives = 24/64 (37%)
Frame = +3
Query: 306 PSDYKPEPIEKPPESQTRESYTSGDNVFQSGSENNISYHSEYGXSRYTGFGNTPKQSQST 485
PS P P PP + S S SGS + S+ TG G +P S +
Sbjct: 1145 PSSQSPPPGSSPPPASPPPSTPSAPPTNSSGSAPSPPSPSQSAPPANTGGGGSPPPSHGS 1204
Query: 486 PMTP 497
P P
Sbjct: 1205 PPAP 1208
>11_01_0574 +
4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 30.7 bits (66), Expect = 3.0
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +3
Query: 351 QTRESYTSGDNVFQSGSENNISYHSEYGXSRYTGFGNTPKQSQSTPMTPIHSGNEVVDNT 530
Q+ + + D+V EN HS +G SR+ + N P++ STP T + SGN +
Sbjct: 738 QSSKIFAPDDSVLNQDQENT---HS-FGISRH--WLNMPQKLHSTPDTKVQSGNSATTSA 791
Query: 531 I-ATLATGWSMFTSSVSKAARTATEN 605
AT + F+ + +++ T +
Sbjct: 792 APPAAATAYYPFSETQTESQNYHTRD 817
>10_05_0060 +
8682253-8682305,8682933-8683162,8684448-8684683,
8687565-8688128
Length = 360
Score = 30.7 bits (66), Expect = 3.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 662 DGGGHFRDLLRCNASIADRVLSCSTRSLAHGGSEHR 555
DG H R + R S D ++CS R+ HG S H+
Sbjct: 306 DGMLHLRFIARRKGSKRDHEIACSIRAKKHGSSTHQ 341
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 29.9 bits (64), Expect = 5.2
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +3
Query: 162 GGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIAALAEGHSWSPSDYKPEPIEKP 341
G KAQE Y T + Y + Y +K +EG S KP+P +
Sbjct: 255 GYGRKAQEESYGSAGYGGRKTEEESYGGGSGYGYGKKAQEESEGTYGSGGYPKPKPYSQ- 313
Query: 342 PESQTRESYTSGDN-VFQSGSENNISY 419
E+Q Y G+ ++SG N SY
Sbjct: 314 EETQGSYGYGYGEKPAYESGGYNKPSY 340
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 29.5 bits (63), Expect = 6.9
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +3
Query: 342 PESQTRESYTSGDNVFQSGSENNISYHSEYGXSRYTGFGNTPKQSQSTPMTPIHSGNEVV 521
P Q RE++ GD +N I S +R T K+ + P +P H+ E
Sbjct: 699 PHLQIREAWMYGDAPHLGILDNFIKLVS-VNTARIAVAAATTKEEEDMPSSPCHAATEAA 757
Query: 522 DNTIA 536
+ T+A
Sbjct: 758 NATVA 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,802,523
Number of Sequences: 37544
Number of extensions: 595072
Number of successful extensions: 1554
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4629241092
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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