Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C04_e123_06.seq
         (1456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5348| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   8e-10
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.001
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.003
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     35   0.19 
SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.00 
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.0  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 30   4.0  
SB_35883| Best HMM Match : TolA (HMM E-Value=0.11)                     30   5.3  
SB_54313| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.3  
SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)                 29   7.0  
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   29   9.3  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.3  
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                29   9.3  
SB_49889| Best HMM Match : Syntaxin (HMM E-Value=2.3)                  29   9.3  
SB_11993| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.3  

>SB_5348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 62.5 bits (145), Expect = 8e-10
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
 Frame = +3

Query: 96  SHSSVLSLWISGKT*XLEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKI 275
           +H+S  SL +      + +M+VGGN KA+ FF SQPD   G ++  KYN+KAAA+YR K+
Sbjct: 65  AHASKNSLILGNAVTHIIQMIVGGNDKAKAFFSSQPDIHQGQSLHDKYNSKAAALYRDKV 124

Query: 276 A-----ALAEGHSWSPSDYKPEPIEKP 341
                 A  +G   +    +P P ++P
Sbjct: 125 CDMRHQARTQGGGGAGGTKRPPPPKRP 151


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +2

Query: 8   PRAAGXSEGPTAFGICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
           P  A  S+G     IC+ CSGVHR+LG  +S  +S+ +D W D
Sbjct: 28  PEWASASKG---IFICITCSGVHRNLGTQISVVKSLRLDTWTD 67


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 14/24 (58%), Positives = 21/24 (87%)
 Frame = +2

Query: 53  CLDCSGVHRSLGVHLSFXRSVTMD 124
           C++CSGVHR +GVH+S  +S+T+D
Sbjct: 121 CIECSGVHRGMGVHVSRVQSITLD 144


>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 34.7 bits (76), Expect = 0.19
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
 Frame = +3

Query: 297 SWSPS-DYKPEPIEKPPESQTRE-SYTSGDNVFQSGS-ENNISYHSEYGXSRYTGFGNTP 467
           S++P+  Y P P   P  S T   SYT   +   + S  +  SY S    +  T + +TP
Sbjct: 109 SYTPTPSYTPTPSYTPTPSYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTP 168

Query: 468 KQSQSTPMTPIHSGNEVVDNTIATLATGWSMFTSSVSKAARTA 596
             + +T  T   S       T  T  T  + +TS+ S  + T+
Sbjct: 169 SYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTS 211



 Score = 31.9 bits (69), Expect = 1.3
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
 Frame = +3

Query: 297 SWSPS-DYKPEPIEKPPESQT-RESYTSGDNVFQSGS-ENNISYHSEYGXSRYTGFGNTP 467
           S++P+  Y P P   P  S T   SYTS  +   + S  +  SY      +    +  TP
Sbjct: 67  SYTPTTSYTPTPSYTPTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPSYTPTPSYTPTP 126

Query: 468 KQSQSTPMTPIHSGNEVVDNTIATLATGWSMFTSSVSKAARTATENAVRYGGIAS 632
             + +T  TP  S       T  T  T  + +TS+ S  +  +  +   Y    S
Sbjct: 127 SYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTS 181


>SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 32.3 bits (70), Expect = 1.00
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 324 EPIEKPPESQTRESYTSGDNVFQSGS-ENNISYHSEYGXSRYTGFGNTPKQSQSTPMTPI 500
           EP  KP   +TR+S     + F S     ++S  SEYG       G  P Q+ +TP  P 
Sbjct: 68  EPSNKPAGGRTRKSSMGPTSPFVSQRLPLSLSRVSEYGSGMTAVDGVCPPQTHTTPTAPA 127

Query: 501 HSGNE 515
             G +
Sbjct: 128 SIGGD 132


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 77  RSLGVHLSFXRSVTMDKWK 133
           RSLGVH+S  RS+T+D W+
Sbjct: 299 RSLGVHVSKVRSLTLDAWE 317


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 17/62 (27%), Positives = 22/62 (35%)
 Frame = -2

Query: 462 CFRNRCSGXXRTRYGSLCCFRSHFGRRYPLKCRIRAFVTPGASLSAQACNPRGSRSDLQL 283
           C RN C       YGS  C  +    +   +C +R  +  G   S    NP     D Q 
Sbjct: 368 CLRNPCQHTCTNTYGSYTCSCNACYTKVGTQCDLRQCLISGRCYSYGTVNPSNPCQDCQS 427

Query: 282 EQ 277
            Q
Sbjct: 428 RQ 429


>SB_35883| Best HMM Match : TolA (HMM E-Value=0.11)
          Length = 391

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 378 PLKCRIRAFVTPGASLSAQACNPRGSRSDLQLEQLSSACT*QLP 247
           PLKC  R+ +  G   S QACNP   R   + ++ +     Q+P
Sbjct: 21  PLKCYSRSSLNFGECDSQQACNPLACRDSKKKQKCNQWTVFQIP 64


>SB_54313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 52 NPKCRRSLGXSCSPGDP 2
          +PK ++SL  SCSPGDP
Sbjct: 5  SPKHKKSLSNSCSPGDP 21


>SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)
          Length = 807

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 408 CFRSHFGRRYPLKCRIRAFVTPGASLSAQACNPRGSRS 295
           CF   FG  + L      F+ P     + +CNP  S S
Sbjct: 404 CFNHRFGSNFLLLPGFSTFILPNGQTKSDSCNPDSSLS 441


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = +3

Query: 270  KIAALAEGHSWSPSDYKPEPIEKPPESQTRESYTSGDNVFQSGSENNISYHSEYGXSRYT 449
            K+A LAE     P+D      E+ PE    + YTS +   +  SEN  S H  +  S Y+
Sbjct: 891  KMAPLAEEREDEPTD------EQTPEQSEPDEYTSTEERQKISSEN--SDHDRH-YSDYS 941

Query: 450  GFGNTPKQSQSTPMTPIHSGN 512
                   Q +  P   +H G+
Sbjct: 942  DDSEYMSQEEELPTRALHVGD 962


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
 Frame = +3

Query: 261 YRQKIAALAEGHSWSPSDYKPEPIEKPPESQTRESYTSGDN-VFQSGS---ENNISYHSE 428
           Y Q+        S S      +PI  P   Q R  +    N V QSG+   + ++    +
Sbjct: 70  YGQQSVGFTSSVSLSGHGTSMQPIPSPVSQQGRGYHPMSPNQVMQSGAMMPQADLMGSQQ 129

Query: 429 YGX---SRYTGFGNTPKQSQSTPMTP 497
           YG    S Y G+   P Q +  P +P
Sbjct: 130 YGSYTDSSYQGYSTYPSQGRIPPASP 155


>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 309 SDYKPEPIEKPPESQTRESYTSGDNVFQSGSENNISYHSEYGXSRYTGFGNTPKQSQSTP 488
           S+ +  P  +P +  TR++ +    V  S    NI+ HS        G G    +S +TP
Sbjct: 486 SNARNSPNREPLKQITRDNQSQNTPVLPSKRGKNINPHSRGTGRPARGRGRVSDRSSATP 545

Query: 489 MT--PIHSGN 512
           ++  P+  GN
Sbjct: 546 VSHRPMTQGN 555


>SB_49889| Best HMM Match : Syntaxin (HMM E-Value=2.3)
          Length = 220

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 695 LHPPRIXHLFSDGGGHFRDLLRCNASIADRVLSCSTRSLAHGGSEHRPARSEG 537
           +H  R+  L++   G  R  +R   SIA  +  C+   LAH  S  +  + EG
Sbjct: 1   MHHLRLAALYAKLVGRSRQPIRQQDSIATAIDVCAKMQLAHDASSKKLLKKEG 53


>SB_11993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 73 NARTIKANPKCRRSLGXSCSPGDP 2
          N    +A P+ RR+   SCSPGDP
Sbjct: 14 NKSWYRAPPRGRRAKSNSCSPGDP 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,402,908
Number of Sequences: 59808
Number of extensions: 626245
Number of successful extensions: 2279
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2278
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4683373023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)