Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C04_e123_06.seq
         (1456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   3.8  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   8.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 465 PKQSQSTPMTPIHSGNEVVDNTIATLATGWSMFTSSVSKAARTATENAVRYGGIASQK-V 641
           PK+S  + M     G   + N + T  +G S+F  ++        +  +RY  + SQ  V
Sbjct: 432 PKKSDMSNMQSDDGGPLSLKNKVETTHSGTSLFRINLGIECGYEIKKLLRYKLLISQNAV 491

Query: 642 SEM 650
           SE+
Sbjct: 492 SEL 494


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 483 TPMTPIHSGNEVVDNTIATLATGWSMFTSSVSKAARTATE 602
           T  TP+   N+ V  T    A  W M   ++    + ATE
Sbjct: 96  TGSTPLTFVNDTVSFTTTVSARFWLMDCRNIGAVPKMATE 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,061
Number of Sequences: 438
Number of extensions: 5256
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 50601375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)