Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_C04_e123_06.seq
(1456 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 58 1e-08
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 56 4e-08
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 52 1e-06
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 50 4e-06
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 50 4e-06
At3g17660.1 68416.m02255 human Rev interacting-like family prote... 50 5e-06
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 48 1e-05
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 48 2e-05
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 48 2e-05
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 48 2e-05
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 47 4e-05
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 47 4e-05
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 47 4e-05
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 47 4e-05
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 44 2e-04
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 44 2e-04
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 44 3e-04
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 42 0.001
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 29 7.6
>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
(ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
from GI:4519792 [Arabidopsis thaliana]; contains
InterPro accession IPR001164: Human Rev interacting-like
protein (hRIP)
Length = 456
Score = 58.4 bits (135), Expect = 1e-08
Identities = 25/41 (60%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKDIXIRE-DVGRRE 169
+CL+CSG HR LGVH+SF RSVTMD W +I I++ D G E
Sbjct: 38 MCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMDAGGNE 78
Score = 50.4 bits (115), Expect = 3e-06
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Frame = +3
Query: 144 LEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIAALAEGHSWSPSDYKP 323
++KM GGN + F ++Q I+ KYN+ AA++YR +I ALAEG W
Sbjct: 69 IKKMDAGGNERLNNF-LAQYGISKETDIISKYNSNAASVYRDRIQALAEGRQWRDPPIVK 127
Query: 324 EPI------EKPPESQ--TRESYTSG-DNVFQSGS--ENNISYHSEYGXSRYTGFGNTPK 470
E + +KPP SQ R+S G DN S ++ + G R +G P
Sbjct: 128 ESVGGGLMNKKPPLSQGGGRDSGNGGWDNWDNDDSFRSTDMRRNQSAGDFRSSGGRGAPA 187
Query: 471 QSQST 485
+S+S+
Sbjct: 188 KSKSS 192
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 56.4 bits (130), Expect = 4e-08
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +3
Query: 144 LEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIAALAEGHSWSPSDYKP 323
++KM GGN + +FF +Q I+ KYN+ AA++YR +I ALAEG W+
Sbjct: 69 IKKMEAGGNERLNKFF-AQYGIAKETDIISKYNSNAASVYRDRIQALAEGRPWNDPPVVK 127
Query: 324 EPIEKPPESQTRESYTSGDNVFQSGS-ENNISYHSE 428
E +KPP +Q + +N S +N+ SY S+
Sbjct: 128 EANKKPPLAQGGYGNNNNNNNGGWDSWDNDDSYKSD 163
Score = 55.2 bits (127), Expect = 1e-07
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKDIXIRE 151
+CL+CSG HR LGVH+SF RSVTMD W I I++
Sbjct: 38 MCLECSGKHRGLGVHISFVRSVTMDSWSAIQIKK 71
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 51.6 bits (118), Expect = 1e-06
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 35 PTAFGICLDCSGVHRSLGVHLSFXRSVTMDKWKDIXIR 148
P +C+DCS VHRSLGVH+SF RS +D W +R
Sbjct: 39 PYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLR 76
Score = 39.5 bits (88), Expect = 0.005
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +3
Query: 144 LEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIA 278
L M+ GGN +AQ FF Q + G I KY ++AA MYRQ +A
Sbjct: 75 LRTMMFGGNNRAQVFF-KQHGWNDGGKIEAKYTSRAADMYRQTLA 118
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 50.0 bits (114), Expect = 4e-06
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKW 130
+C+DCS VHRSLGVH+SF RS +D W
Sbjct: 44 LCIDCSAVHRSLGVHISFVRSTNLDSW 70
Score = 37.1 bits (82), Expect = 0.029
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 102 SSVLSLWISGKT*XLEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIA- 278
S+ L W S + L+ M+ GGN +AQ FF Q + G KY ++AA +Y+Q +A
Sbjct: 64 STNLDSWSSEQ---LKMMIYGGNNRAQVFF-KQYGWSDGGKTEAKYTSRAADLYKQILAK 119
Query: 279 ALAEGHSWSPSDYKPEP 329
+A+ + D P P
Sbjct: 120 EVAKSKAEEELDLPPSP 136
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 50.0 bits (114), Expect = 4e-06
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKW 130
+C+DCS VHRSLGVH+SF RS +D W
Sbjct: 44 LCIDCSAVHRSLGVHISFVRSTNLDSW 70
Score = 37.1 bits (82), Expect = 0.029
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 102 SSVLSLWISGKT*XLEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIA- 278
S+ L W S + L+ M+ GGN +AQ FF Q + G KY ++AA +Y+Q +A
Sbjct: 64 STNLDSWSSEQ---LKMMIYGGNNRAQVFF-KQYGWSDGGKTEAKYTSRAADLYKQILAK 119
Query: 279 ALAEGHSWSPSDYKPEP 329
+A+ + D P P
Sbjct: 120 EVAKSKAEEELDLPPSP 136
>At3g17660.1 68416.m02255 human Rev interacting-like family protein
/ hRIP family protein similar to ARF GAP-like zinc
finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 117
Score = 49.6 bits (113), Expect = 5e-06
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKW 130
IC+ CSG+HRSLGVH+S RS+T+D W
Sbjct: 50 ICMQCSGIHRSLGVHISQVRSITLDTW 76
>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 483
Score = 48.4 bits (110), Expect = 1e-05
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKW 130
IC+ CSG+HRSLGVH+S RS T+D W
Sbjct: 50 ICMQCSGIHRSLGVHISKVRSATLDTW 76
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 48.0 bits (109), Expect = 2e-05
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKDIXIR 148
+C+DCS HR+LGVH+SF RS +D W +R
Sbjct: 47 LCIDCSATHRNLGVHISFVRSTNLDSWSPEQLR 79
Score = 37.1 bits (82), Expect = 0.029
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +3
Query: 144 LEKMLVGGNAKAQEFFVSQPDYKAGMTIMQKYNTKAAAMYRQKIA 278
L M+ GGN +AQ FF Q + G I KY ++AA +YRQ +A
Sbjct: 78 LRTMMFGGNNRAQVFF-KQHGWTDGGKIEAKYTSRAADLYRQILA 121
>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana];contains Pfam
profile: PF01412 Putative GTP-ase activating protein for
Arf
Length = 385
Score = 48.0 bits (109), Expect = 2e-05
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKDIXIREDVG 160
IC+ CSGVHRSLGVH+S SV +D+W D + VG
Sbjct: 81 ICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVG 117
>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 336
Score = 47.6 bits (108), Expect = 2e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
ICL C GVHRSLG H+S SVT+D+W D
Sbjct: 49 ICLKCCGVHRSLGTHISKVLSVTLDEWSD 77
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 46.8 bits (106), Expect = 4e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
ICL C GVHRSLG H+S SVT+D+W D
Sbjct: 49 ICLKCCGVHRSLGSHISKVLSVTLDEWSD 77
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 46.8 bits (106), Expect = 4e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
ICL C GVHRSLG H+S SVT+D+W D
Sbjct: 49 ICLKCCGVHRSLGSHISKVLSVTLDEWSD 77
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 46.8 bits (106), Expect = 4e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
ICL C GVHRSLG H+S SVT+D+W D
Sbjct: 49 ICLKCCGVHRSLGSHISKVLSVTLDEWSD 77
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 46.8 bits (106), Expect = 4e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMDKWKD 136
ICL C GVHRSLG H+S SVT+D+W D
Sbjct: 49 ICLKCCGVHRSLGSHISKVLSVTLDEWSD 77
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 44.4 bits (100), Expect = 2e-04
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMD 124
IC++CSG+HR+LGVH+S RS+T+D
Sbjct: 554 ICIECSGIHRNLGVHISKVRSLTLD 578
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 44.4 bits (100), Expect = 2e-04
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMD 124
+C++CSGVHR+LGVH+S RS+T+D
Sbjct: 476 VCIECSGVHRNLGVHISKVRSLTLD 500
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 43.6 bits (98), Expect = 3e-04
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMD 124
+C++CSGVHR+LGVH+S RS+T+D
Sbjct: 501 MCIECSGVHRNLGVHISKVRSLTLD 525
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 41.5 bits (93), Expect = 0.001
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +2
Query: 50 ICLDCSGVHRSLGVHLSFXRSVTMD 124
+C+ CSGVHR+LGVH+S RS+++D
Sbjct: 501 LCIQCSGVHRNLGVHISKVRSLSLD 525
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 29.1 bits (62), Expect = 7.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 318 KPEPIEKPPESQTRES-YTSGDNVFQSGSENNI 413
KP P PE++T + + GD+VF +G+ NN+
Sbjct: 132 KPAPSPPKPENKTIPAVFFFGDSVFDTGNNNNL 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,150,805
Number of Sequences: 28952
Number of extensions: 421393
Number of successful extensions: 1077
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3855436800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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