Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_C03_e115_05.seq
(1496 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu... 188 2e-46
UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishma... 136 1e-30
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc... 128 5e-28
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa... 110 1e-22
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo... 106 2e-21
UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|R... 105 2e-21
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell... 105 4e-21
UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultu... 102 2e-20
UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole ge... 68 7e-10
UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1; ... 64 7e-09
UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3; ... 60 1e-07
UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n... 54 1e-05
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 52 5e-05
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 50 2e-04
UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3; ... 50 2e-04
UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48; Bacter... 50 2e-04
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 50 2e-04
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 48 6e-04
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 48 8e-04
UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellu... 45 0.004
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 44 0.014
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 42 0.032
UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus ... 42 0.042
UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1; Neorick... 42 0.055
UniRef50_Q7QSF4 Cluster: GLP_426_5093_5482; n=1; Giardia lamblia... 41 0.096
UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putati... 40 0.13
UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps... 40 0.13
UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whol... 40 0.22
UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11; ... 40 0.22
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.51
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ... 38 0.51
UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29; ... 38 0.51
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L... 38 0.51
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet... 38 0.51
UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=... 36 2.1
UniRef50_Q9ZV33 Cluster: Dof zinc finger protein DOF2.2; n=4; Ar... 36 2.7
UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639... 36 3.6
UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;... 36 3.6
UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo... 35 4.8
UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11; ... 35 4.8
UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=... 34 8.4
>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
(Human)
Length = 151
Score = 188 bits (459), Expect = 2e-46
Identities = 97/139 (69%), Positives = 104/139 (74%)
Frame = +1
Query: 109 PRXKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 288
PR K K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGMK
Sbjct: 3 PR-KGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMK 61
Query: 289 VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXX 468
VKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA AQ
Sbjct: 62 VKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALAR 121
Query: 469 XXMKIGRIEDVTPVPSDST 525
MKIGRIEDVTP+PSDST
Sbjct: 122 SGMKIGRIEDVTPIPSDST 140
>UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishmania
major|Rep: 40S ribosomal protein S14 - Leishmania major
Length = 203
Score = 136 bits (329), Expect = 1e-30
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = +1
Query: 133 KEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEA 312
K+EV+ GP G++V+GV HIFASFNDTFVHVTD+SGRET +VTGGMKVKADRDE+
Sbjct: 13 KQEVKA-YGPNVKKGDLVYGVVHIFASFNDTFVHVTDMSGRETYVKVTGGMKVKADRDES 71
Query: 313 SPYAAMLAAQDVAEKCKTLGITALHIKLRA 402
SPYAAM+AAQDV +CK GI ALH+K+RA
Sbjct: 72 SPYAAMMAAQDVVARCKECGINALHVKMRA 101
>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
Ostreococcus tauri
Length = 243
Score = 128 bits (308), Expect = 5e-28
Identities = 63/98 (64%), Positives = 71/98 (72%)
Frame = +1
Query: 232 HVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXX 411
HVTDLSG+ET++R TGGMKVKADRDE+SPYAAMLAAQDVA +CK LGITALHIK+RA
Sbjct: 90 HVTDLSGKETLSRCTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKMRAKGG 149
Query: 412 XXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 525
Q +KIGRIEDVTP P+DST
Sbjct: 150 NKTKSPGPGGQSALRALSRSGIKIGRIEDVTPTPTDST 187
Score = 48.4 bits (110), Expect = 5e-04
Identities = 24/36 (66%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 127 VAKEEVQVT-LGPQHLVGEIVFGVAHIFASFNDTFV 231
V+ V T +GPQ GE+VFGVAHIFASFNDTFV
Sbjct: 9 VSVRRVMATYVGPQAREGELVFGVAHIFASFNDTFV 44
>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
jannaschii
Length = 129
Score = 110 bits (264), Expect = 1e-22
Identities = 54/113 (47%), Positives = 70/113 (61%)
Frame = +1
Query: 187 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 366
+G+ HI++S+N+T +H TD++G ETIARV+GG + RDE SPYAAM AA +AE K
Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKE 68
Query: 367 LGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 525
GI +HIK+RA AQ ++IGRIEDVTPVP D T
Sbjct: 69 RGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121
>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S11P -
Cenarchaeum symbiosum
Length = 198
Score = 106 bits (254), Expect = 2e-21
Identities = 50/122 (40%), Positives = 73/122 (59%)
Frame = +1
Query: 160 PQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 339
P+ + G+AHI++S+N+T +H+TDL+G ET++ +GG+ V ADR E+SP+AAM AA
Sbjct: 66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAA 125
Query: 340 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 519
V E + G T HI++RA AQ +IGRI+DVTP+P D
Sbjct: 126 NKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHD 185
Query: 520 ST 525
+T
Sbjct: 186 TT 187
>UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|Rep:
Ribosomal protein S14 - Palaemonetes pugio
Length = 77
Score = 105 bits (253), Expect = 2e-21
Identities = 53/69 (76%), Positives = 56/69 (81%)
Frame = +1
Query: 109 PRXKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 288
PR K K KEEVQV LGPQ GE VF V HI+AS+NDTFVHVTDLSGRETI RVTGG K
Sbjct: 3 PR-KGKTPKEEVQVQLGPQVREGENVFAVCHIYASYNDTFVHVTDLSGRETIIRVTGGQK 61
Query: 289 VKADRDEAS 315
VKADRDE+S
Sbjct: 62 VKADRDESS 70
>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
natans|Rep: Ribosomal protein S14 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 145
Score = 105 bits (251), Expect = 4e-21
Identities = 50/118 (42%), Positives = 69/118 (58%)
Frame = +1
Query: 172 VGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVA 351
+ + +FG+ HI ++ NDT +HVTD++G ETI+R++ G+ +D+ S Y AMLA Q V+
Sbjct: 7 IKKYLFGILHILSTKNDTIIHVTDITGSETISRISSGIVATNGKDKKSNYCAMLATQKVS 66
Query: 352 EKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 525
CK LGI ALHIK+RA A KIGRIED TP P++ T
Sbjct: 67 NVCKVLGINALHIKIRARGGNASHLISTGAHTVVTTLVRLGFKIGRIEDTTPTPTNGT 124
>UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultured
euryarchaeote ARMAN-2|Rep: 30S ribosomal protein S11 -
uncultured euryarchaeote ARMAN-2
Length = 169
Score = 102 bits (245), Expect = 2e-20
Identities = 52/113 (46%), Positives = 70/113 (61%)
Frame = +1
Query: 187 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 366
+ VAH+++S NDT + +TDLSG ETIA +GGM V AD E SPYAAM AA VA + K
Sbjct: 46 WAVAHVYSSKNDTIITLTDLSGSETIAVGSGGMMVNADSQEGSPYAAMQAAYKVAAEAKE 105
Query: 367 LGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 525
GIT ++I++RA AQ +++ RIEDVTP+P+D+T
Sbjct: 106 KGITNINIEIRAPGGHGSKTPGHGAQAVVRVLARSGLRVNRIEDVTPIPTDTT 158
>UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_246, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 182
Score = 67.7 bits (158), Expect = 7e-10
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 256 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 402
ET+ R TGGMK K D +E+SP AAM AAQDV+++CK L IT LH+KL A
Sbjct: 50 ETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDITVLHVKLHA 98
>UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 104
Score = 64.5 bits (150), Expect = 7e-09
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 256 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 402
ET+ R TGGMK KAD +E+SP AAM AAQDV+++ K L IT LH+KL A
Sbjct: 29 ETLVRSTGGMKEKADGEESSPCAAMPAAQDVSQRFKELDITVLHVKLHA 77
>UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3;
Homo/Pan/Gorilla group|Rep: Similar to ribosomal protein
S14 - Homo sapiens (Human)
Length = 350
Score = 60.5 bits (140), Expect = 1e-07
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = +1
Query: 283 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 402
MK +AD+DE+SP AML AQDV ++CK LGITALHIKL A
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLA 40
>UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBF82A UniRef100 entry -
Rattus norvegicus
Length = 119
Score = 54.0 bits (124), Expect = 1e-05
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +1
Query: 148 VTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGR-ETIARVTGGMKVKADRDEASPYA 324
++L PQ + G+ V GV +IFASF D+F++ TD+ G+ T VT MK + E +P
Sbjct: 5 LSLRPQVVEGQNVLGVCYIFASFGDSFIYGTDVYGKVNTCQYVTSRMKTQ--YAETNPCH 62
Query: 325 AMLA-AQDVAEKCKTLGITALHIKLR 399
+ A DV + K + + ALHI+L+
Sbjct: 63 RLHAGCLDVTHRFKEMSVPALHIRLQ 88
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 51.6 bits (118), Expect = 5e-05
Identities = 25/73 (34%), Positives = 43/73 (58%)
Frame = +1
Query: 181 IVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKC 360
I GVAH+ ++FN+T + ++D+ G G M K R +++PYAA LAA+D K
Sbjct: 17 IASGVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQLAAEDAGRKA 75
Query: 361 KTLGITALHIKLR 399
+ G+ L ++++
Sbjct: 76 QDHGVKTLEVEVQ 88
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 50.0 bits (114), Expect = 2e-04
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Frame = +1
Query: 106 WPRXKNKVAKEEV-QVTLGPQHLVGEIV--------FGVAHIFASFNDTFVHVTDLSGRE 258
W + K+ K+EV ++L + L ++ GVAHI + N+T + +TDL G
Sbjct: 115 WTKGSEKIGKKEVGTISLLHRKLADKMGKKKRGVQRLGVAHIQTTLNNTIITITDLDGNT 174
Query: 259 TIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXX 438
+G + K R + S YAA AA+ A+K LGI + +K+R
Sbjct: 175 KSWSSSGSIGFKGSRRKTS-YAAQAAAETAAKKSIQLGIKDVTVKIRG--------FGPG 225
Query: 439 AQXXXXXXXXXXMKIGRIEDVTPVP 513
+KI +I+D TP+P
Sbjct: 226 RDSSLRGLQIGGLKIYKIQDTTPLP 250
>UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 332
Score = 50.0 bits (114), Expect = 2e-04
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 271 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 363
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
>UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48;
Bacteria|Rep: 30S ribosomal protein S11 - Streptococcus
mutans
Length = 127
Score = 50.0 bits (114), Expect = 2e-04
Identities = 30/108 (27%), Positives = 52/108 (48%)
Frame = +1
Query: 190 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 369
G+AHI A+FN+T V +TD+ G G + K R +++P+AA +AA+ A+ +
Sbjct: 17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEH 75
Query: 370 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 513
G+ + + ++ A +++ I DVTPVP
Sbjct: 76 GLKTVEVTVKGPGSGRESAIRALA--------AAGLEVTSIRDVTPVP 115
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 49.6 bits (113), Expect = 2e-04
Identities = 32/108 (29%), Positives = 53/108 (49%)
Frame = +1
Query: 190 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 369
G+A++ A+FN+T V TDL G I TGG +++ YAA + A D A+K + +
Sbjct: 38 GIAYVLATFNNTKVTFTDLHG-NVICWSTGGKNGFKGSRKSTAYAAQVIAGDAAKKAQLV 96
Query: 370 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 513
G+ + ++++ A M+I I+D+TPVP
Sbjct: 97 GMKEVEVRIKGPGAGRESAVRGIA--------AAGMEISTIKDITPVP 136
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 48.0 bits (109), Expect = 6e-04
Identities = 31/112 (27%), Positives = 51/112 (45%)
Frame = +1
Query: 178 EIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 357
++ G+AHI ASFN+T V +TD G +GG + R +++P+AA +AA+
Sbjct: 16 QVADGMAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGAA 74
Query: 358 CKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 513
+ G+ L + ++ + KI I DVTP+P
Sbjct: 75 AQDYGLKNLEVFVKG--------PGPGRESAIRALNAVGYKITNITDVTPIP 118
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 47.6 bits (108), Expect = 8e-04
Identities = 30/108 (27%), Positives = 50/108 (46%)
Frame = +1
Query: 190 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 369
G+AH+ ASFN+T + +TD G +GG K R +++P+AA +A++
Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVASEVAGRAAIEQ 82
Query: 370 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 513
GI L ++++ + ++I I DVTPVP
Sbjct: 83 GIKNLDVEIKG--------PGPGRESSVRALGALGIRINSIADVTPVP 122
>UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellular
organisms|Rep: 30S ribosomal protein S11 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 45.2 bits (102), Expect = 0.004
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +1
Query: 190 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 369
G+AHI ASFN+T V ++D SG + +G + + R + +P+AA AA A +
Sbjct: 32 GLAHIQASFNNTIVTISDPSGNVVSWKSSGSLGFRGSR-KGTPFAAQQAAMTAANMARDH 90
Query: 370 GITALHIKL 396
G+ +L +++
Sbjct: 91 GMRSLDVRV 99
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 43.6 bits (98), Expect = 0.014
Identities = 28/108 (25%), Positives = 50/108 (46%)
Frame = +1
Query: 190 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 369
G+AHI ++FN+T V +TD G G + + R +++P+AA +AA+ A+
Sbjct: 21 GIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSR-KSTPFAAQMAAETAAKGSIEH 79
Query: 370 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 513
G+ L + ++ + +++ I DVTPVP
Sbjct: 80 GLKTLEVTVKG--------PGSGREAAIRALQAAGLEVTAIRDVTPVP 119
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 42.3 bits (95), Expect = 0.032
Identities = 24/70 (34%), Positives = 40/70 (57%)
Frame = +1
Query: 190 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 369
GVAHI ++ N+T V +D G +G + K + + + YAA LAAQ+ +EK K
Sbjct: 21 GVAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTA-YAAGLAAQNASEKAKEH 79
Query: 370 GITALHIKLR 399
GI + ++++
Sbjct: 80 GIREVSVRVK 89
>UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus
oeni ATCC BAA-1163|Rep: Ribosomal protein S11 -
Oenococcus oeni ATCC BAA-1163
Length = 113
Score = 41.9 bits (94), Expect = 0.042
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +1
Query: 190 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 369
GVAHI ++FN+T V +TD +G G + K R +++P+AA LA + A+
Sbjct: 22 GVAHIHSTFNNTIVLITDEAGNAVSWSSAGSLGFKGSR-KSTPFAAQLAGEAAAKAAMEQ 80
Query: 370 GITALHIKLR 399
+ ++ I ++
Sbjct: 81 NMHSVAISVK 90
>UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S11 - Neorickettsia sennetsu (strain Miyayama)
Length = 120
Score = 41.5 bits (93), Expect = 0.055
Identities = 22/72 (30%), Positives = 39/72 (54%)
Frame = +1
Query: 181 IVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKC 360
IV G AH+ +FN+ ++ VTD G +G + K ++ +++ YAA A + K
Sbjct: 7 IVSGNAHVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNK-KSTAYAAQSVATTLMTKL 65
Query: 361 KTLGITALHIKL 396
K +G+ L++ L
Sbjct: 66 KRIGLKILNVHL 77
>UniRef50_Q7QSF4 Cluster: GLP_426_5093_5482; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_426_5093_5482 - Giardia lamblia ATCC
50803
Length = 129
Score = 40.7 bits (91), Expect = 0.096
Identities = 26/95 (27%), Positives = 43/95 (45%)
Frame = -3
Query: 561 LQPASSSSTLPACGVRRHRGHIFNAANLHAGTSESTESRLGTRSRSLCLVTSSRTELNVQ 382
LQ A++++TL A + R+RG +F L + + + + +L+V
Sbjct: 35 LQTATAATTLVARAICRYRGGVFYTPYLDPTAHKGADGSTAALAIDALARAAVGADLDVH 94
Query: 381 GSYPQGFTFLSNILCSQHSGVG*SLITISLHFHAS 277
G Y L IL H V LIT++LH H++
Sbjct: 95 GGYTAVGNDLDKILGGLHCSVCRWLITVALHLHST 129
>UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putative;
n=19; Spermatophyta|Rep: Small subunit ribosomal
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 40.3 bits (90), Expect = 0.13
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 199 HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 378
H+ N TFV VTD+ G + G ++ + R S YAA A+ V + +G+
Sbjct: 248 HVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGLK 307
Query: 379 ALHIKLR 399
++ +K++
Sbjct: 308 SVVMKVK 314
>UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps11
- Ostreococcus tauri
Length = 121
Score = 40.3 bits (90), Expect = 0.13
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +1
Query: 202 IFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 381
I + N+TFV++TDL G +G + K + ++S YAA + V + C I
Sbjct: 15 ISTTLNNTFVNLTDLEGNTLCCVSSGSLGFKGSK-KSSSYAAQSTTEKVLQFCAQQSIEK 73
Query: 382 LHIKLR 399
L IKLR
Sbjct: 74 LMIKLR 79
>UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whole
genome shotgun sequence; n=3; cellular organisms|Rep:
Chromosome undetermined SCAF14706, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 39.5 bits (88), Expect = 0.22
Identities = 19/69 (27%), Positives = 40/69 (57%)
Frame = +1
Query: 193 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 372
+AH+ A++N+T + VTD +G+ ++ R + G + + +++P AA A A K G
Sbjct: 106 IAHVKATYNNTHIQVTDSAGK-SMVRTSCGTEGFKNIKKSTPIAAQTAGISAAAKATAKG 164
Query: 373 ITALHIKLR 399
+T + + ++
Sbjct: 165 VTFVRVVVK 173
>UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11;
n=85; Tracheophyta|Rep: Chloroplast 30S ribosomal
protein S11 - Arabidopsis thaliana (Mouse-ear cress)
Length = 138
Score = 39.5 bits (88), Expect = 0.22
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +1
Query: 157 GPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLA 336
G + V I GV H+ ASFN+T V VTD+ GR G + R +P+AA A
Sbjct: 17 GSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTA 75
Query: 337 AQDVAEKCKTLGITALHIKLR 399
A + G+ ++++
Sbjct: 76 AGNAIRAVVDQGMQRAEVRIK 96
>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
Erwinia amylovora|Rep: Putative uncharacterized protein
- Erwinia amylovora (Fire blight bacteria)
Length = 123
Score = 38.3 bits (85), Expect = 0.51
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +1
Query: 754 DWENPGVXQLXRXAXIPPFXXW 819
DWENPGV QL R A PPF W
Sbjct: 76 DWENPGVTQLNRLAAHPPFASW 97
>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
organisms|Rep: LacZ-alpha peptide - Escherichia coli
Length = 90
Score = 38.3 bits (85), Expect = 0.51
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +1
Query: 754 DWENPGVXQLXRXAXIPPFXXW 819
DWENPGV QL R A PPF W
Sbjct: 30 DWENPGVTQLNRLAAHPPFASW 51
>UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29;
Magnoliophyta|Rep: Small subunit ribosomal protein -
Berberis thunbergii (Japanese barberry)
Length = 150
Score = 38.3 bits (85), Expect = 0.51
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 193 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 372
+ H+ N+TFV VTD G + G ++ S YAA A+ V + LG
Sbjct: 46 LVHLLPLHNNTFVTVTDARGNKKTGASAGSLEEFKGGSRLSRYAAKATAEHVGRSARNLG 105
Query: 373 ITALHIKLR 399
+ ++ +K++
Sbjct: 106 MKSVVMKVK 114
>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
protein - Phage M13mp18
Length = 102
Score = 38.3 bits (85), Expect = 0.51
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +1
Query: 754 DWENPGVXQLXRXAXIPPFXXW 819
DWENPGV QL R A PPF W
Sbjct: 34 DWENPGVTQLNRLAAHPPFASW 55
>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
Beta-galactosidase - Escherichia coli (strain K12)
Length = 1024
Score = 38.3 bits (85), Expect = 0.51
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +1
Query: 754 DWENPGVXQLXRXAXIPPFXXW 819
DWENPGV QL R A PPF W
Sbjct: 16 DWENPGVTQLNRLAAHPPFASW 37
>UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S11 - Prototheca wickerhamii
Length = 128
Score = 36.3 bits (80), Expect = 2.1
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +1
Query: 190 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 369
G+ HI ++ N+T + +TDL G G + K R +++ YA+ AA+ +A K
Sbjct: 18 GIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSR-KSTVYASGAAAEALASKAFNE 76
Query: 370 GITALHIKLR 399
G + +K++
Sbjct: 77 GYRTIIVKIK 86
>UniRef50_Q9ZV33 Cluster: Dof zinc finger protein DOF2.2; n=4;
Arabidopsis thaliana|Rep: Dof zinc finger protein DOF2.2
- Arabidopsis thaliana (Mouse-ear cress)
Length = 340
Score = 35.9 bits (79), Expect = 2.7
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = -3
Query: 474 AGTSESTESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNIL-CSQHSGVG*SLITI 298
+G S+S+ S +S S+ TS NVQ F FL + +Q G+G +L I
Sbjct: 151 SGNSKSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQFPFLPTLQNLTQLGGIGLNLAAI 210
Query: 297 SLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHPEYYLTHQVLGTKSHLNL 139
+ + +GNT +SF +G H G + E L LG+ SH L
Sbjct: 211 NGNNGGNGNTSSSF-LNDLGFFHGGNTSGPVMGNNNENNLMTS-LGSSSHFAL 261
>UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1639 - Pyrococcus horikoshii
Length = 102
Score = 35.5 bits (78), Expect = 3.6
Identities = 25/95 (26%), Positives = 39/95 (41%)
Frame = -3
Query: 501 HIFNAANLHAGTSESTESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILCSQHSG 322
++ N + + S+ L T RS +S NV F S+H
Sbjct: 6 NVLNPSYFKSCPSQGPNCSLCTWPRSFAFASSWGPHPNVNTDNSLFQCFFCCSPSSKHCC 65
Query: 321 VG*SLITISLHFHASGNTGNSFSTGQIGNVHECVI 217
+G LI +S ++H + + F TG I NV+ VI
Sbjct: 66 IGGRLIPVSFNYHTTAPSAYRFRTGDISNVNNGVI 100
>UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;
Streptophyta|Rep: Plastid 30S ribosomal protein S11 -
Epifagus virginiana (Beechdrops)
Length = 136
Score = 35.5 bits (78), Expect = 3.6
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +1
Query: 190 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 339
GV H+ SFN+T V VTD+ GR G K R + +AA +AA
Sbjct: 28 GVIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCGFKGTR-RGTSFAAQIAA 76
>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
Eukaryota|Rep: beta-galactosidase - Entamoeba
histolytica HM-1:IMSS
Length = 86
Score = 35.1 bits (77), Expect = 4.8
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +2
Query: 755 TGKTLAXPNLXALXXFPLSPXG 820
TGKTLA PNL AL PLSP G
Sbjct: 14 TGKTLALPNLIALQHIPLSPAG 35
>UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11;
n=10; cellular organisms|Rep: Chloroplast 30S ribosomal
protein S11 - Cyanidium caldarium
Length = 129
Score = 35.1 bits (77), Expect = 4.8
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +1
Query: 181 IVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKC 360
++ G+ I ++FN+T V TD G+ IA +GG + + +P+AA A + + +
Sbjct: 16 VIDGLIIINSTFNNTIVTATDCYGK-VIAWASGGTEGFKGAKKGTPFAAQSATEKLIKAL 74
Query: 361 KTLGITALHIKL 396
G +HI +
Sbjct: 75 LEQGTQRIHISV 86
>UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=2;
Arabidopsis thaliana|Rep: 30S ribosomal protein S11,
putative - Arabidopsis thaliana (Mouse-ear cress)
Length = 235
Score = 34.3 bits (75), Expect = 8.4
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 193 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 372
+ HI N+TFV VTD G +G + + + Y A A+++ + K +G
Sbjct: 116 IIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMG 175
Query: 373 ITALHIKL 396
+ ++ +K+
Sbjct: 176 LKSVVVKV 183
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,005,451,845
Number of Sequences: 1657284
Number of extensions: 17061410
Number of successful extensions: 38340
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 36339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38309
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 158892113150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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