Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C03_e115_05.seq
         (1496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425...   187   2e-47
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315...   175   1e-43
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...   164   1e-40
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30...    50   5e-06
09_02_0373 - 8098060-8098229,8098316-8098375,8098486-8098674,809...    33   0.58 
01_04_0088 + 15930755-15931174,15931262-15931321                       29   9.5  

>04_03_0871 -
           20441689-20441756,20442220-20442349,20442422-20442507,
           20444271-20444316,20444425-20444547,20445302-20445370
          Length = 173

 Score =  187 bits (456), Expect = 2e-47
 Identities = 94/138 (68%), Positives = 103/138 (74%)
 Frame = +1

Query: 112 RXKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 291
           R K +  KEE  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKV
Sbjct: 26  RKKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 84

Query: 292 KADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXX 471
           KADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA            AQ         
Sbjct: 85  KADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 144

Query: 472 XMKIGRIEDVTPVPSDST 525
            MKIGRIEDVTPVP+DST
Sbjct: 145 GMKIGRIEDVTPVPTDST 162


>02_04_0100 -
           19730137-19730237,19731215-19731344,19731419-19731504,
           19732410-19732455,19732558-19732680,19732779-19732781
          Length = 162

 Score =  175 bits (425), Expect = 1e-43
 Identities = 94/149 (63%), Positives = 103/149 (69%), Gaps = 11/149 (7%)
 Frame = +1

Query: 112 RXKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 291
           R K +  KEE  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKV
Sbjct: 4   RKKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62

Query: 292 KADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXX 471
           KADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA            AQ         
Sbjct: 63  KADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122

Query: 472 XMKIGRI-----------EDVTPVPSDST 525
            MKIGRI           EDVTPVP+DST
Sbjct: 123 GMKIGRIADDVLSIFCHTEDVTPVPTDST 151


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score =  164 bits (399), Expect = 1e-40
 Identities = 83/127 (65%), Positives = 92/127 (72%)
 Frame = +1

Query: 112 RXKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 291
           + K +  KEE  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKV
Sbjct: 3   KRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 292 KADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXX 471
           KADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA            AQ         
Sbjct: 62  KADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 472 XMKIGRI 492
            MKIGRI
Sbjct: 122 GMKIGRI 128


>02_01_0045 +
           307058-307552,308670-308716,308779-308866,309664-309756,
           309788-309950,310554-310627,310889-310927
          Length = 332

 Score = 50.0 bits (114), Expect = 5e-06
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +1

Query: 271 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 363
           V GGMK+KAD DE+SPYAAML +QDVA  CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241



 Score = 29.5 bits (63), Expect = 7.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 271 VTGGMKVKADRDEASPYAAMLAAQDVA 351
           V GGM +K+D DE SP+ + +   D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192


>09_02_0373 -
           8098060-8098229,8098316-8098375,8098486-8098674,
           8098994-8099108,8099374-8099427,8099600-8099709,
           8099792-8099879,8099969-8100181
          Length = 332

 Score = 33.1 bits (72), Expect = 0.58
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 354 LSNILCSQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHPEYY-L 178
           L NI+   H  VG  ++T  L +   GNT   ++   IG V  C I GG Y     +Y L
Sbjct: 37  LLNIIEPFHRFVGRDMMT-DLRYPLKGNTVPFWAVPLIGIVLPCAIFGGIYFKKKNFYDL 95

Query: 177 THQVLG 160
            H +LG
Sbjct: 96  HHGILG 101


>01_04_0088 + 15930755-15931174,15931262-15931321
          Length = 159

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 97  AKPWPRXKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTF 228
           AKP    K  + K+E      P  LV +IV+  ++IFASF DT+
Sbjct: 114 AKPHKSWKKLLYKDEQSFVCTPP-LVVQIVYIWSYIFASFFDTY 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,834,611
Number of Sequences: 37544
Number of extensions: 549700
Number of successful extensions: 1295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4791670604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)