Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C03_e115_05.seq
         (1496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.55 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   3.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   6.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   6.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 0.55
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 385 AGQLSPGFYISQQHPVQPT*RRRVKPHH 302
           AG L P ++  Q HP Q    R   PHH
Sbjct: 309 AGFLPPSYHPHQHHPSQYHPHRGSSPHH 336


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 417 LVTSSRTELNVQGSYPQGFTFLSNILCSQHSG 322
           ++TS + E+N  G+Y   F   SN +  Q SG
Sbjct: 28  VITSQQLEVNFDGNYINNFE-TSNGISHQESG 58


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -3

Query: 258 FSTGQIGNVHECVIEGGEYVCH--PEYYL 178
           F TG +GNV  CV+       H    YYL
Sbjct: 64  FVTGLVGNVSTCVVIARNKSMHTATNYYL 92


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 711 SRIQFHLAVVLXRRXLGKPWRXP 779
           S+I+F L+VV     LG  WR P
Sbjct: 24  SKIEFILSVVGLAIGLGNLWRFP 46


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 711 SRIQFHLAVVLXRRXLGKPWRXP 779
           S+I+F L+VV     LG  WR P
Sbjct: 77  SKIEFILSVVGLAIGLGNLWRFP 99


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -1

Query: 311 ASSRSAFTFMPPVTRAIVSRPDRSVTCTNV 222
           A  R  FT+   + ++I+  PD+ +T   +
Sbjct: 501 ADVRPPFTYASLIRQSIIESPDKQLTLNEI 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,358
Number of Sequences: 438
Number of extensions: 5514
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52276125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)