Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C03_e115_05.seq
         (1496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           182   4e-46
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   182   5e-46
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   181   9e-46
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ...    36   0.069
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ...    34   0.21 

>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  182 bits (444), Expect = 4e-46
 Identities = 90/138 (65%), Positives = 102/138 (73%)
 Frame = +1

Query: 112 RXKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 291
           + K K  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKV
Sbjct: 3   KRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 292 KADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXX 471
           KADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA            AQ         
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 472 XMKIGRIEDVTPVPSDST 525
            MKIGRIEDVTP+P+DST
Sbjct: 122 GMKIGRIEDVTPIPTDST 139


>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  182 bits (443), Expect = 5e-46
 Identities = 89/137 (64%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
 Frame = +1

Query: 118 KNKVAKEEVQ-VTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 294
           K K  + +V+ VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 3   KRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62

Query: 295 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 474
           ADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA            AQ          
Sbjct: 63  ADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSG 122

Query: 475 MKIGRIEDVTPVPSDST 525
           MKIGRIEDVTP+P+DST
Sbjct: 123 MKIGRIEDVTPIPTDST 139


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  181 bits (441), Expect = 9e-46
 Identities = 88/137 (64%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
 Frame = +1

Query: 118 KNKVAKEEVQ-VTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 294
           K K  + +V+ VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 3   KRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVK 62

Query: 295 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 474
           ADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA            AQ          
Sbjct: 63  ADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSG 122

Query: 475 MKIGRIEDVTPVPSDST 525
           MKIGRIEDVTP+P+DST
Sbjct: 123 MKIGRIEDVTPIPTDST 139


>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP2 GI:5059394
           from [Arabidopsis thaliana]
          Length = 340

 Score = 35.9 bits (79), Expect = 0.069
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
 Frame = -3

Query: 474 AGTSESTESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNIL-CSQHSGVG*SLITI 298
           +G S+S+ S    +S S+   TS     NVQ      F FL  +   +Q  G+G +L  I
Sbjct: 151 SGNSKSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQFPFLPTLQNLTQLGGIGLNLAAI 210

Query: 297 SLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHPEYYLTHQVLGTKSHLNL 139
           + +   +GNT +SF    +G  H     G     + E  L    LG+ SH  L
Sbjct: 211 NGNNGGNGNTSSSF-LNDLGFFHGGNTSGPVMGNNNENNLMTS-LGSSSHFAL 261


>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
           putative contains Pfam profile: PF00411: Ribosomal
           protein S11
          Length = 314

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +1

Query: 193 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 372
           + HI    N+TFV VTD  G       +G +       + + Y A   A+++  + K +G
Sbjct: 195 IIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMG 254

Query: 373 ITALHIKL 396
           + ++ +K+
Sbjct: 255 LKSVVVKV 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,253,405
Number of Sequences: 28952
Number of extensions: 396549
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3990377088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)