BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_C02_e107_06.seq (1436 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 262 8e-71 SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 259 8e-70 SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 3e-04 SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 29 2.1 SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 2.1 SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 27 6.4 >SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A |Schizosaccharomyces pombe|chr 2|||Manual Length = 292 Score = 262 bits (642), Expect = 8e-71 Identities = 121/204 (59%), Positives = 152/204 (74%) Frame = +2 Query: 128 GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXX 307 G ++L ++ED+ ++LAA H+G++N+ +M+ YV+KRR DG H++NL +TWEK Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64 Query: 308 XXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 487 E+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+ Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124 Query: 488 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 667 +V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREV Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184 Query: 668 LRLRGVLSRDQRWDVVVDLFFYRD 739 LR+RG LSR WDV+ DL+FYRD Sbjct: 185 LRVRGTLSRSAPWDVMPDLYFYRD 208 >SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein S0B|Schizosaccharomyces pombe|chr 1|||Manual Length = 287 Score = 259 bits (634), Expect = 8e-70 Identities = 122/200 (61%), Positives = 149/200 (74%) Frame = +2 Query: 140 LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 319 +L +++D+ +LAA +H+G++N+ +ME YV+KRR DG H+INL +TWEK Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69 Query: 320 XXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 499 E+PADV VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129 Query: 500 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 679 P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189 Query: 680 GVLSRDQRWDVVVDLFFYRD 739 G +SR W+V+ DL+FYRD Sbjct: 190 GNISRTTAWEVMPDLYFYRD 209 >SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|Schizosaccharomyces pombe|chr 1|||Manual Length = 263 Score = 41.5 bits (93), Expect = 3e-04 Identities = 20/62 (32%), Positives = 33/62 (53%) Frame = +2 Query: 476 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 655 P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239 Query: 656 AR 661 +R Sbjct: 240 SR 241 >SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 980 Score = 28.7 bits (61), Expect = 2.1 Identities = 12/37 (32%), Positives = 16/37 (43%) Frame = +2 Query: 848 PVASWAEDAAPGTRCSCYIWDSPXTRRLGPVXVQDXW 958 PVA + E PG + DSP + P V+ W Sbjct: 70 PVAEYVEKTTPGEKKVLQDLDSPALKSYNPKAVESAW 106 >SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual Length = 539 Score = 28.7 bits (61), Expect = 2.1 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Frame = +2 Query: 398 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 562 + A P G T+ I A F+ +P + ++ D + T A + + L Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87 Query: 563 CNTDSPLRFVDIAIPCNTKSSHSI 634 C+ +S RF D+A+ NTK +H I Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110 >SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 27.1 bits (57), Expect = 6.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 632 IGLMWWLLAREVLRLRGVLSRDQRWD 709 IGL W L REV R + + +R++ WD Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,948,527 Number of Sequences: 5004 Number of extensions: 69473 Number of successful extensions: 174 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 174 length of database: 2,362,478 effective HSP length: 75 effective length of database: 1,987,178 effective search space used: 800832734 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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