Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C02_e107_06.seq
         (1436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   258   1e-68
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   255   7e-68
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    33   0.73 
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    31   1.7  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  258 bits (631), Expect = 1e-68
 Identities = 119/208 (57%), Positives = 148/208 (71%)
 Frame = +2

Query: 116 ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 295
           A   G    L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK 
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62

Query: 296 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFRE 475
                     E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F E
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 122

Query: 476 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 655
           PRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLL
Sbjct: 123 PRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLL 182

Query: 656 AREVLRLRGVLSRDQRWDVVVDLFFYRD 739
           AR VL++RG +    +WDV+VDLFFYRD
Sbjct: 183 ARMVLQMRGTILPGHKWDVMVDLFFYRD 210


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  255 bits (624), Expect = 7e-68
 Identities = 120/206 (58%), Positives = 147/206 (71%), Gaps = 2/206 (0%)
 Frame = +2

Query: 128 GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 301
           GG    ALS  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 302 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 481
                   E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPR
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124

Query: 482 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 661
           LLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184

Query: 662 EVLRLRGVLSRDQRWDVVVDLFFYRD 739
            VL++RG +    +WDV+VDLFFYRD
Sbjct: 185 MVLQMRGTILPGHKWDVMVDLFFYRD 210


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 702 VGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKXXRQFMRNGLRMLNQLHHGLK 869
           VGM+  T S +  LK +    NKL   +  L  W    Q++R  +  + Q+  GL+
Sbjct: 104 VGMIPSTLSQLPNLKILDLAQNKLNGEIPRLIYWNEVLQYLRLNICNVGQIVRGLR 159


>09_04_0594 -
           18831011-18831360,18831562-18832111,18832364-18833406,
           18833496-18833760,18835194-18835340,18835431-18835511,
           18835626-18835804,18835935-18836093,18836269-18836398,
           18836935-18837094,18837337-18837419,18837865-18837915,
           18838035-18838151,18838273-18838359
          Length = 1133

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +2

Query: 71  RHEGHYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 232
           R++GHY +  VT      +G + L+ L +ED+ K L+A  H   E +   MET+
Sbjct: 248 RNKGHYIKSQVTAA----TGAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,067,999
Number of Sequences: 37544
Number of extensions: 540178
Number of successful extensions: 1200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4559628444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)