BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_C02_e107_06.seq (1436 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 318 9e-87 SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 3.0 SB_34021| Best HMM Match : Zip (HMM E-Value=0) 30 4.0 SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 30 5.2 >SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) Length = 328 Score = 318 bits (780), Expect = 9e-87 Identities = 145/206 (70%), Positives = 168/206 (81%) Frame = +2 Query: 122 MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 301 MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR+ DG ++IN+++TWEK Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60 Query: 302 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 481 E+PADV VIS+R +GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR Sbjct: 61 AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120 Query: 482 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 661 LLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAR Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180 Query: 662 EVLRLRGVLSRDQRWDVVVDLFFYRD 739 EVLR+RG +SR W+++ DL+FYRD Sbjct: 181 EVLRMRGSISRALPWEIMPDLYFYRD 206 >SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) Length = 432 Score = 30.7 bits (66), Expect = 3.0 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +2 Query: 494 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 589 LDP +HQPIT+ + I ++A TD+PL+F Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147 >SB_34021| Best HMM Match : Zip (HMM E-Value=0) Length = 808 Score = 30.3 bits (65), Expect = 4.0 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -1 Query: 755 SHSLQGHDRRTSQRQHPNAGHD*EHHGVSILH 660 SH GH H N GH E+HG S H Sbjct: 316 SHENHGHSHENHGHSHENHGHSHENHGHSHKH 347 Score = 30.3 bits (65), Expect = 4.0 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = -1 Query: 755 SHSLQGHDRRTSQRQHPNAGHD*EHHGVS 669 SH GH H N GH +HHG S Sbjct: 323 SHENHGHSHENHGHSHENHGHSHKHHGHS 351 Score = 29.5 bits (63), Expect = 6.9 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -1 Query: 755 SHSLQGHDRRTSQRQHPNAGHD*EHHGVSILH 660 SH GH + H N GH E+HG S H Sbjct: 337 SHENHGHSHKHHGHSHDNHGHSHENHGHSHGH 368 >SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) Length = 1772 Score = 29.9 bits (64), Expect = 5.2 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = -3 Query: 723 KSTTTSQRWSRLRTPRSLNTSRANNHHIRPMECEDLVLHGIAMST-NL---RGESVLHKA 556 K+TT RWS+ +TP ++ H + L+ HG ST NL + + VL++ Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453 Query: 555 ITGMLTY 535 G +TY Sbjct: 1454 ELGTMTY 1460 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 31,552,400 Number of Sequences: 59808 Number of extensions: 590842 Number of successful extensions: 1258 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1255 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4612946361 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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