Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_C02_e107_06.seq
(1436 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 257 1e-68
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 249 3e-66
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 235 5e-62
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.81
At1g80540.1 68414.m09441 expressed protein ; expression supporte... 32 1.1
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 4.3
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 257 bits (630), Expect = 1e-68
Identities = 116/199 (58%), Positives = 144/199 (72%)
Frame = +2
Query: 143 LALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXX 322
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEK
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 323 XEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 502
E+P D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131
Query: 503 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 682
DHQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191
Query: 683 VLSRDQRWDVVVDLFFYRD 739
++ Q+WDV+VDLFFYR+
Sbjct: 192 TIAAGQKWDVMVDLFFYRE 210
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 249 bits (610), Expect = 3e-66
Identities = 112/195 (57%), Positives = 140/195 (71%)
Frame = +2
Query: 155 EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 334
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K E+P
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 335 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 514
D+ V S+R +GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 515 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSR 694
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196
Query: 695 DQRWDVVVDLFFYRD 739
Q+WDV+VDLFFYR+
Sbjct: 197 AQKWDVMVDLFFYRE 211
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 235 bits (575), Expect = 5e-62
Identities = 106/189 (56%), Positives = 134/189 (70%)
Frame = +2
Query: 155 EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 334
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K E+P
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 335 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 514
D+ V S+R +GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 515 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSR 694
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196
Query: 695 DQRWDVVVD 721
Q+WDV+V+
Sbjct: 197 AQKWDVMVN 205
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.81
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 476 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 625
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At1g80540.1 68414.m09441 expressed protein ; expression supported
by MPSS
Length = 481
Score = 31.9 bits (69), Expect = 1.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 343 HISWILHGDNSTSSEYKLFPCTPKINYVRT 254
H + + G N T+S Y PC P +NY+RT
Sbjct: 79 HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 431 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 532
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,759,755
Number of Sequences: 28952
Number of extensions: 394053
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3797605248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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