Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C01_e099_05.seq
         (1438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       45   1e-04
04_03_0649 - 18402976-18403220,18403305-18404499                       38   0.019
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159...    30   3.9  
05_03_0086 + 8279518-8280320,8280923-8281844                           30   3.9  
10_08_0009 + 14075929-14076789                                         29   9.0  
03_02_0517 + 9054816-9055655                                           29   9.0  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +3

Query: 294 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDD 473
           S  +HL Y S  I  +T   V+   + +     +N+ +          ++  L++G D+ 
Sbjct: 62  SLYSHLYYSSLSID-ETRCAVAPPSSGEESSILSNFSSSIKSSGGGFAVKTILSIGTDEF 120

Query: 474 TEDPQK--YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 602
            ED     ++ +      R AF NS++ LA   GFDG+DL+W+ P
Sbjct: 121 REDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 37.9 bits (84), Expect = 0.019
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 480 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 602
           DP  +  +   P +R AF  +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170


>08_01_0192 +
           1594530-1594682,1594755-1594955,1595051-1595280,
           1595596-1595766,1595902-1596007,1596339-1596545,
           1596638-1596802
          Length = 410

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 534 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 647
           T   +L+ E + FD   L+W +  R P +I++++  +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376


>05_03_0086 + 8279518-8280320,8280923-8281844
          Length = 574

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 498 LLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKR-KPKKIRSSIGSFWHSIKKTFGT 674
           LL++ P  R AFT  A  + +   FDG+  +W L +   P  +   +  F         T
Sbjct: 478 LLVKEPHKRIAFTRGATEIKQHPFFDGV--NWALVRSLTPPSVPEPV-DFRQYAAAASAT 534

Query: 675 TPVDDKESEH 704
           TP D K  E+
Sbjct: 535 TPKDKKPPEN 544


>10_08_0009 + 14075929-14076789
          Length = 286

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +3

Query: 381 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALL--- 551
           D A+ +  A+   K   P L V L +GGD  T      N       +  A+  +A     
Sbjct: 62  DTANLSPAAVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVS 119

Query: 552 -LAEQYGFDGIDLSWQ 596
            L + YG DG+D+ ++
Sbjct: 120 GLIDAYGLDGVDVDYE 135


>03_02_0517 + 9054816-9055655
          Length = 279

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 247 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 381
           +++ H  C+  W  L  S P+C   LPA+     +    + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,426,114
Number of Sequences: 37544
Number of extensions: 503495
Number of successful extensions: 1142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4559628444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)