Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_C01_e099_05.seq
(1438 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 1e-14
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 79 1e-14
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 71 3e-12
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 6e-09
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 49 1e-05
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 38 0.020
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 78.6 bits (185), Expect = 1e-14
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Frame = +3
Query: 216 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 395
+CY+ + + R + LP D++P L CTH++Y A I T K+ + N D
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----R 453
Query: 396 NYRAITNLKRQFPQLRVFLTVGGDDDTEDP-QKYNLLLESPQARTAFTNSALLLAEQYGF 572
Y+ I +LK + P L+ L VGG + P ++ ++ S RT F +S L L+++Y F
Sbjct: 454 LYKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513
Query: 573 DGIDLSWQLP 602
DG DL W+ P
Sbjct: 514 DGFDLDWEYP 523
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 78.6 bits (185), Expect = 1e-14
Identities = 44/142 (30%), Positives = 69/142 (48%)
Frame = +3
Query: 219 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN 398
CYY + S R P D++P L CTH+L+ A + T+K+ EN H
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77
Query: 399 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 578
Y+ I LK+ P+L+ + VGG E ++ ++ + + R F SA+ +GFDG
Sbjct: 78 YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDG 137
Query: 579 IDLSWQLPKRKPKKIRSSIGSF 644
+DL W+ P + +S G F
Sbjct: 138 LDLDWEYPGMRGGSPKSDKGRF 159
Score = 72.5 bits (170), Expect = 7e-13
Identities = 42/143 (29%), Positives = 69/143 (48%)
Frame = +3
Query: 216 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 395
+CYY + S R P D++P L CTH+++ + + T+ M +N D D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462
Query: 396 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 575
Y+ I LK+ P+L+ + VGG E ++ ++ + + R F SA+ GFD
Sbjct: 463 -YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFD 521
Query: 576 GIDLSWQLPKRKPKKIRSSIGSF 644
G+DL W+ P + +S G F
Sbjct: 522 GLDLDWEYPGMRGGSPKSDKGRF 544
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 70.5 bits (165), Expect = 3e-12
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = +3
Query: 216 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAH 392
+CY+ + S R+ +A+ P D+ PA CTHL+Y A I Q + M N+ D+ +
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75
Query: 393 ANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGF 572
+ A LK++ P+L+ L VGG + ++ ++++ R F +S + + +GF
Sbjct: 76 PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGF 132
Query: 573 DGIDLSWQLP 602
DG+DL W+ P
Sbjct: 133 DGLDLDWEYP 142
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 59.7 bits (138), Expect = 6e-09
Identities = 37/129 (28%), Positives = 64/129 (49%)
Frame = +3
Query: 216 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 395
+CYY + + R A+ P +++P+L CTH++Y A + AD K+ N A
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAA 76
Query: 396 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 575
Y+ + +LK ++ L VGG + P + ++ + R F + A+L + FD
Sbjct: 77 MYKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFD 133
Query: 576 GIDLSWQLP 602
G+DL W+ P
Sbjct: 134 GLDLDWEYP 142
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 48.8 bits (111), Expect = 1e-05
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +3
Query: 399 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 578
Y+ +LK + P L+ L VGG + ++ ++ + +R F +S++ + Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246
Query: 579 IDLSWQLP 602
DL W+ P
Sbjct: 247 FDLDWEYP 254
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 37.9 bits (84), Expect = 0.020
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 399 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 578
Y+ + +LK ++ L VGG + P + ++ + R F + A+L + FDG
Sbjct: 2 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58
Query: 579 IDLSWQLP 602
+DL W+ P
Sbjct: 59 LDLDWEYP 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,874,604
Number of Sequences: 59808
Number of extensions: 560059
Number of successful extensions: 1443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4612946361
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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