Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C01_e099_05.seq
         (1438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              25   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   8.6  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 578 DRSILAIXXXXXXXDSFEYWIFLAQHQENIRDYPC 682
           DRS +         DS E  I L   +EN R+Y C
Sbjct: 36  DRSNMTFHELKKLRDSSEARIKLINEEENFRNYGC 70


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 672 TTPVDDKESEHREGFTALV 728
           T P+DD  S+  EGF A++
Sbjct: 150 TNPLDDSISQANEGFCAVI 168


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 672 TTPVDDKESEHREGFTALV 728
           T P+DD  S+  EGF A++
Sbjct: 145 TNPLDDSISQANEGFCAVI 163


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +3

Query: 1068 PIPPXRGGNWXLXKXXLXXP 1127
            P PP RGG W         P
Sbjct: 377  PPPPIRGGEWTFDTLRKTTP 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,739
Number of Sequences: 438
Number of extensions: 5332
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 50186334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)