Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B10_e170_04.seq
         (1496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0975 + 8223269-8224354                                           32   1.0  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.1  
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    29   7.2  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   7.2  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   7.2  

>07_01_0975 + 8223269-8224354
          Length = 361

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
 Frame = +2

Query: 875  TVYQGDGPXX*TSPLIXXFWGPXG-PXXPLNXDPXGRPPXLXLAGESPGTXPRXXGXKXX 1051
            T Y G      +SP       P G P    +  P G P      G + G  P   G    
Sbjct: 235  TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAG-GP-ASGPSSY 292

Query: 1052 GAAPGPXQGDXXPWAXPPPXXXXAPSRAXXGA 1147
            GAA GP +G     A   P    +PS A   A
Sbjct: 293  GAASGPAEGPSSSGAASGPAEGPSPSGAAGPA 324



 Score = 30.7 bits (66), Expect = 3.1
 Identities = 26/100 (26%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
 Frame = -3

Query: 1167 GXGHPQKAPXXALEGAXXXXGGGSAQGCXSPXXGPGAAPXXXXPSXLGXVPGLSPARXXX 988
            G G    AP  +        GG S     SP   P ++P     S     P  SPA    
Sbjct: 219  GSGSAASAPGPS-PSDDTGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPA 277

Query: 987  GGLPXG------SXFKGFXGPXGPQKXXIRGDVHXXGPSP 886
            GG   G      S +    GP               GPSP
Sbjct: 278  GGPTAGGPASGPSSYGAASGPAEGPSSSGAASGPAEGPSP 317


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 496 ITIHWPSFYNVV-TGKTLALPNLIALQH 576
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>12_02_0118 - 13869237-13869307,13869375-13869465,13870321-13870440,
            13870668-13870795,13871159-13871270,13871719-13871817,
            13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 27/80 (33%), Positives = 30/80 (37%)
 Frame = +2

Query: 929  FWGPXGPXXPLNXDPXGRPPXLXLAGESPGTXPRXXGXKXXGAAPGPXQGDXXPWAXPPP 1108
            F GP  P       P GRPP    AG+S    P   G     A P P  G   P A P P
Sbjct: 165  FGGP--PVAAAQPPPFGRPPSAAAAGQS---AP-LGGALFAAAQPPPFGGP--PGAAPQP 216

Query: 1109 XXXXAPSRAXXGAFWGWPXP 1168
                AP+      + G P P
Sbjct: 217  ----APTGGLRTPYGGPPAP 232


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 558 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 656
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 558 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 656
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,908,887
Number of Sequences: 37544
Number of extensions: 706327
Number of successful extensions: 1684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4791670604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)