Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B10_e170_04.seq
         (1496 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    28   0.80 

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
            chain precursor protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
 Frame = -2

Query: 1069 GXRG--GAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXTP 932
            G RG  G  G      R GP   PG    +G    V + G  GPR  P
Sbjct: 438  GERGQMGPKGGQGVPGRPGPEGMPGDKGDKGESGSVGMPGPQGPRGYP 485



 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 1057 GAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPR 941
            G  G        GPR FPG+   +G P    + G  G +
Sbjct: 235  GLEGLPGPQGEVGPRGFPGRPGEKGVPGTPGVRGERGDK 273


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,257
Number of Sequences: 2352
Number of extensions: 24477
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 175156245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)