Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_B10_e170_04.seq
(1496 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 35 0.67
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 35 0.67
AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collag... 35 0.67
Y11710-1|CAA72402.1| 755|Homo sapiens collagen type XIV protein. 34 1.5
Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V) pr... 33 2.0
X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for ... 33 2.0
BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein. 33 2.0
BC083495-1|AAH83495.1| 388|Homo sapiens COL14A1 protein protein. 33 2.0
BC014640-1|AAH14640.1| 759|Homo sapiens COL14A1 protein protein. 33 2.0
AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen a... 33 2.0
AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen... 33 2.0
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 35.1 bits (77), Expect = 0.67
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRGGAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXTPK 929
G RPG P + G G GPR G RGPP G+ + G GP+ P
Sbjct: 1534 GEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPP-GLVLPGDPGPKGDPG 1592
Query: 928 XL-D*GXCSRXGP 893
G R GP
Sbjct: 1593 DRGPIGLTGRAGP 1605
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 35.1 bits (77), Expect = 0.67
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRGGAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXTPK 929
G RPG P + G G GPR G RGPP G+ + G GP+ P
Sbjct: 1534 GEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPP-GLVLPGDPGPKGDPG 1592
Query: 928 XL-D*GXCSRXGP 893
G R GP
Sbjct: 1593 DRGPIGLTGRAGP 1605
>AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collagen
precursor variant protein.
Length = 1027
Score = 35.1 bits (77), Expect = 0.67
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRGGAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXTPK 929
G RPG P + G G GPR G RGPP G+ + G GP+ P
Sbjct: 173 GEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPP-GLVLPGDPGPKGDPG 231
Query: 928 XL-D*GXCSRXGP 893
G R GP
Sbjct: 232 DRGPIGLTGRAGP 244
>Y11710-1|CAA72402.1| 755|Homo sapiens collagen type XIV protein.
Length = 755
Score = 33.9 bits (74), Expect = 1.5
Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRGGAXGFXPXX-SRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXTP 932
G PG V G RG P SR G PG RGPP + + G GP P
Sbjct: 674 GEKGNPG--VGTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQP 731
Query: 931 KXLD*GXCSRXGPIALI 881
D CS G LI
Sbjct: 732 GYCDPSSCSAYGVRDLI 748
>Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V)
protein.
Length = 1496
Score = 33.5 bits (73), Expect = 2.0
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRG--GAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXT 935
G RPG P L G RG G G + GP PG+ GPP + I G G
Sbjct: 555 GDPGRPGEP-GLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIKGQPGTMGL 613
Query: 934 P 932
P
Sbjct: 614 P 614
>X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for
pro-alpha 2 (V) collagen chain. ).
Length = 1099
Score = 33.5 bits (73), Expect = 2.0
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRG--GAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXT 935
G RPG P L G RG G G + GP PG+ GPP + I G G
Sbjct: 158 GDPGRPGEP-GLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIKGQPGTMGL 216
Query: 934 P 932
P
Sbjct: 217 P 217
>BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein.
Length = 1139
Score = 33.5 bits (73), Expect = 2.0
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRG--GAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXT 935
G RPG P L G RG G G + GP PG+ GPP + I G G
Sbjct: 198 GDPGRPGEP-GLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGL 256
Query: 934 P 932
P
Sbjct: 257 P 257
>BC083495-1|AAH83495.1| 388|Homo sapiens COL14A1 protein protein.
Length = 388
Score = 33.5 bits (73), Expect = 2.0
Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRGGAXGFXPXX-SRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXTP 932
G PG V G RG P SR G PG RGPP + + G GP P
Sbjct: 291 GEKGNPG--VGTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQP 348
Query: 931 KXLD*GXCSRXG 896
D CS G
Sbjct: 349 GYCDPSSCSAYG 360
>BC014640-1|AAH14640.1| 759|Homo sapiens COL14A1 protein protein.
Length = 759
Score = 33.5 bits (73), Expect = 2.0
Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRGGAXGFXPXX-SRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXTP 932
G PG V G RG P SR G PG RGPP + + G GP P
Sbjct: 662 GEKGNPG--VGTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQP 719
Query: 931 KXLD*GXCSRXG 896
D CS G
Sbjct: 720 GYCDPSSCSAYG 731
>AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen alpha
2 chain protein.
Length = 1347
Score = 33.5 bits (73), Expect = 2.0
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRG--GAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXT 935
G RPG P L G RG G G + GP PG+ GPP + I G G
Sbjct: 406 GDPGRPGEP-GLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGL 464
Query: 934 P 932
P
Sbjct: 465 P 465
>AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen
preproprotein variant protein.
Length = 1502
Score = 33.5 bits (73), Expect = 2.0
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -2
Query: 1108 GXGXRPGXPVXLXGXRG--GAXGFXPXXSRXGPRAFPGQXQXRGPPXGVXI*GXXGPRXT 935
G RPG P L G RG G G + GP PG+ GPP + I G G
Sbjct: 561 GDPGRPGEP-GLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGL 619
Query: 934 P 932
P
Sbjct: 620 P 620
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,201,893
Number of Sequences: 237096
Number of extensions: 4239399
Number of successful extensions: 20560
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20378
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22197699270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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