Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B10_e170_04.seq
         (1496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    33   0.69 
Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    30   3.7  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    30   3.7  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    30   3.7  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     30   3.7  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     30   3.7  
AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen prot...    29   8.5  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    29   8.5  

>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
            x-hybridizingprotein 1 protein.
          Length = 589

 Score = 32.7 bits (71), Expect = 0.69
 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
 Frame = +2

Query: 935  GPXGPXXPLNXDPXGRPPXLXLAGESP----GTXP-RXXGXKXXGAAPGPXQGDXXPWAX 1099
            GP GP  P    P G PP      E+P     T P    G    G  PGP      P + 
Sbjct: 180  GPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSG 239

Query: 1100 PPP 1108
             PP
Sbjct: 240  GPP 242



 Score = 32.7 bits (71), Expect = 0.69
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
 Frame = +2

Query: 935  GPXGPXXPLNXDPXGRPPX-LXLAGESPGTXPRX----XGXKXXGAAPGPXQGDXXPWAX 1099
            GP GP  P    P G PP     +G  P   P       G    G  PGP      P + 
Sbjct: 300  GPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 359

Query: 1100 PPP 1108
             PP
Sbjct: 360  GPP 362



 Score = 32.7 bits (71), Expect = 0.69
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
 Frame = +2

Query: 935  GPXGPXXPLNXDPXGRPPX-LXLAGESPGTXP----RXXGXKXXGAAPGPXQGDXXPWAX 1099
            GP GP  P    P G PP     +G  P   P       G    G  PGP      P + 
Sbjct: 420  GPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 479

Query: 1100 PPP 1108
             PP
Sbjct: 480  GPP 482



 Score = 32.3 bits (70), Expect = 0.92
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
 Frame = +2

Query: 935  GPXGPXXPLNXDPXGRPPX-LXLAGESPGTXPRX----XGXKXXGAAPGPXQGDXXPWAX 1099
            GP GP  P    P G PP     +G  P   P       G    G  PGP      P + 
Sbjct: 240  GPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 299

Query: 1100 PPP 1108
             PP
Sbjct: 300  GPP 302



 Score = 32.3 bits (70), Expect = 0.92
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
 Frame = +2

Query: 935  GPXGPXXPLNXDPXGRPPX-LXLAGESPGTXPRX----XGXKXXGAAPGPXQGDXXPWAX 1099
            GP GP  P    P G PP     +G  P   P       G    G  PGP      P + 
Sbjct: 360  GPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 419

Query: 1100 PPP 1108
             PP
Sbjct: 420  GPP 422



 Score = 31.1 bits (67), Expect = 2.1
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
 Frame = +2

Query: 935  GPXGPXXPLNXDPXGRPPXL-XLAGESPGTXPRX----XGXKXXGAAPGPXQGDXXPWAX 1099
            GP GP  P    P G PP L   +G  P   P       G    G  PGP      P + 
Sbjct: 150  GPPGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSG 209

Query: 1100 PP 1105
             P
Sbjct: 210  GP 211


>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical protein
            F57B1.4 protein.
          Length = 317

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 27/90 (30%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
 Frame = -3

Query: 1152 QKAPXXALEGAXXXXGGGSAQGCXSPXXGPGAAPXXXXPSXLGXVPGLSPARXXXGGLPX 973
            QK P  A  GA    GG S  G   P   PG +         G  PG         G P 
Sbjct: 187  QKGPSGA-PGAPGQSGGASLPGPPGPAGPPGPSGQPGSNGNAG-APGAPGQVVDVPGTPG 244

Query: 972  GSXFKGFXGPXG-PQKXXIRGDVHXXGPSP 886
             +   G  GP G P +    G     GP P
Sbjct: 245  PAGPPGPPGPAGAPGQPGQSGSAQPGGPGP 274


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical protein
            F15H10.2 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 27/90 (30%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
 Frame = -3

Query: 1152 QKAPXXALEGAXXXXGGGSAQGCXSPXXGPGAAPXXXXPSXLGXVPGLSPARXXXGGLPX 973
            QK P  A  GA    GG +  G   P   PG A         G  PG         G P 
Sbjct: 186  QKGPSGA-PGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAG-APGAPGQVVDVPGTPG 243

Query: 972  GSXFKGFXGPXG-PQKXXIRGDVHXXGPSP 886
             +   G  GP G P +    G     GP P
Sbjct: 244  PAGPPGSPGPAGAPGQPGQAGSSQPGGPGP 273


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical protein
            F15H10.1 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 27/90 (30%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
 Frame = -3

Query: 1152 QKAPXXALEGAXXXXGGGSAQGCXSPXXGPGAAPXXXXPSXLGXVPGLSPARXXXGGLPX 973
            QK P  A  GA    GG +  G   P   PG A         G  PG         G P 
Sbjct: 186  QKGPSGA-PGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAG-APGAPGQVVDVPGTPG 243

Query: 972  GSXFKGFXGPXG-PQKXXIRGDVHXXGPSP 886
             +   G  GP G P +    G     GP P
Sbjct: 244  PAGPPGSPGPAGAPGQPGQAGSSQPGGPGP 273


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 27/90 (30%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
 Frame = -3

Query: 1152 QKAPXXALEGAXXXXGGGSAQGCXSPXXGPGAAPXXXXPSXLGXVPGLSPARXXXGGLPX 973
            QK P  A  GA    GG +  G   P   PG A         G  PG         G P 
Sbjct: 186  QKGPSGA-PGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAG-APGAPGQVVDVPGTPG 243

Query: 972  GSXFKGFXGPXG-PQKXXIRGDVHXXGPSP 886
             +   G  GP G P +    G     GP P
Sbjct: 244  PAGPPGSPGPAGAPGQPGQAGSSQPGGPGP 273


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 27/90 (30%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
 Frame = -3

Query: 1152 QKAPXXALEGAXXXXGGGSAQGCXSPXXGPGAAPXXXXPSXLGXVPGLSPARXXXGGLPX 973
            QK P  A  GA    GG +  G   P   PG A         G  PG         G P 
Sbjct: 186  QKGPSGA-PGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAG-APGAPGQVVDVPGTPG 243

Query: 972  GSXFKGFXGPXG-PQKXXIRGDVHXXGPSP 886
             +   G  GP G P +    G     GP P
Sbjct: 244  PAGPPGSPGPAGAPGQPGQAGSSQPGGPGP 273


>AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen protein
            141 protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +3

Query: 972  PKGGPRX*XWPGKARGPXREXXGXXPX-APPLXPXKXTGXPGRXPXP 1109
            P G P     PG A  P ++  G  P  A P  P    G PG+   P
Sbjct: 148  PAGTPGAPGAPGNAGAPGQDSFGGGPGPAGPTGPTGDAGAPGQPGHP 194


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
            50 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = -3

Query: 1155 PQKAPXXALEGA-XXXXGGGSAQGCXSPXXGPGAAPXXXXPSXLGXVPGLSPARXXXGGL 979
            PQ AP  A   A      GG+A G  +P   P AA            P  +PA    GG 
Sbjct: 343  PQPAPAPAAAAAPAGGYQGGAAAGAAAPPPAPAAAAAPEPAPAPAAAPPPAPA---AGGS 399

Query: 978  PXG 970
            P G
Sbjct: 400  PTG 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,203,590
Number of Sequences: 27780
Number of extensions: 560692
Number of successful extensions: 1443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4308364692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)