Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B10_e170_04.seq
         (1496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79700.1 68414.m09295 ovule development protein, putative sim...    30   3.4  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    30   4.5  

>At1g79700.1 68414.m09295 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana]
          Length = 303

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 122 KQVFPPRRQPFGRTPPQAGVLTNTITQRKRIFLFDKAEFN 241
           K+  PPR  P  R+ P  GV  +  T R    L+DK  +N
Sbjct: 37  KRKSPPRNAPLQRSSPYRGVTRHRWTGRYEAHLWDKNSWN 76


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
            beta-1,3-glucanase-like protein GI:9758115 from
            [Arabidopsis thaliana]
          Length = 356

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 1052 GAAPGPXQGDXXPWAXPPPXXXXAPSRAXXGAFW 1153
            G+ P P  G   P   PPP    +PS     A+W
Sbjct: 234  GSIPSPSSGFLPPIVYPPPMAPPSPSVTPTSAYW 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,872,486
Number of Sequences: 28952
Number of extensions: 506050
Number of successful extensions: 970
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3990377088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)