Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B09_e162_03.seq
         (1546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701...    30   4.3  
10_01_0202 + 2178297-2178406,2180725-2180980,2181838-2181912,218...    30   4.3  
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340...    30   5.6  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    30   5.6  
06_03_0808 - 24799383-24801275                                         29   9.9  

>11_06_0247 -
           21669299-21669348,21669673-21670012,21670110-21670199,
           21670280-21670339,21670564-21670856,21671176-21671245,
           21671623-21671970,21673188-21673318,21673418-21673901,
           21674839-21675558
          Length = 861

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 354 PLVQLHLNFHIFHLRRRRRPVYIHVLHPYP 443
           P + LHL+ H+ H  R  R +++    PYP
Sbjct: 10  PSIHLHLHLHLHHPPRLHRLLHLSTTSPYP 39


>10_01_0202 +
           2178297-2178406,2180725-2180980,2181838-2181912,
           2182386-2182436,2182598-2182724,2182806-2182952,
           2183846-2183976,2184088-2184189,2184604-2184702,
           2185117-2185182,2185218-2185448
          Length = 464

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 113 KKAKEMSKSPQVLPVDATXAVLMARLLDEQKKLPQRELDEL 235
           K+  E   +  V P+     + MARLL ++K +PQ++L EL
Sbjct: 283 KQPNEWDGAILVAPMCKQVLIFMARLLPKEKLVPQKDLAEL 323


>09_02_0042 -
           3402424-3402534,3403242-3403345,3403448-3403562,
           3404344-3404391,3404519-3404608,3404819-3404893,
           3405001-3405153,3405695-3405779,3408051-3408121,
           3408243-3408293,3409037-3409453,3409529-3409660,
           3409779-3409892,3411113-3411179,3411264-3411397,
           3411486-3411701,3412627-3413418
          Length = 924

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 26/108 (24%), Positives = 45/108 (41%)
 Frame = +2

Query: 59  QXIRHEAMTMKFLKSSNPKKAKEMSKSPQVLPVDATXAVLMARLLDEQKKLPQRELDELD 238
           + I HE    KFL+ +  K  KEM    +    D+  A    RL  +   L +++     
Sbjct: 259 EAIEHEVRIHKFLEKTKKKSNKEMDNEEE--GGDSDIAKEQERLRKKVTDLMKKQKIRQV 316

Query: 239 RFFLNISDTVKKFTPYLQAVAKNQIFSLVSEMELQQLAPPSSTSSQFP 382
           R  +   D  K +     A   +++  L+  +E   + PP+S S+  P
Sbjct: 317 RNIVKKQDNSKPWGQDAHAKVGSRLIELM--IETAYIQPPASQSADGP 362


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
 Frame = +2

Query: 110  PKKAKEMSKSPQVLPVDATXAVLMARLLDEQKKLPQRELDELDRFFLNISD--TVKKFTP 283
            PK + E+S  P+V  V+ +  +L+  +L    K P +  +EL++  L + +  +V     
Sbjct: 1500 PKSSSELSLDPKV-AVERSELMLLRAMLQSHSK-PDKAREELNKAKLMLDEALSVVPLNG 1557

Query: 284  YLQAVA-KNQIFSLVSEMELQQLAPPSSTS 370
              +A A   Q++ + +  E  +LA P+ T+
Sbjct: 1558 LTEAAACAGQLYCIFAFEETTELACPNRTN 1587


>06_03_0808 - 24799383-24801275
          Length = 630

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
 Frame = +2

Query: 80  MTMKFLKSSNPKKAKEMSKSP-QVLPVDATXAVLMA------RLLDEQKKLPQRELDELD 238
           +++ +L ++ P      +  P  V PVD T  +L+       R     +      + ELD
Sbjct: 69  LSVAYLLNATPSAVAAANSVPLAVSPVDGTQLLLVPVPCSCNRATGYYQHNTTYAIQELD 128

Query: 239 RFFLNISDTVKKFTPYLQAVAKNQIFSLVSEMELQQLAPP 358
            FFL  ++T +  T Y   +A N     +S +    LA P
Sbjct: 129 TFFLIANNTFQGLTTYQSIIANNPASEAMSPVINGPLAVP 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,836,462
Number of Sequences: 37544
Number of extensions: 570065
Number of successful extensions: 1004
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)