Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_B09_e162_03.seq
(1546 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32169-3|AAC50215.1| 1629|Homo sapiens Pro-a2(XI) protein. 33 3.7
U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein. 33 3.7
U32169-1|AAC50214.1| 1736|Homo sapiens Pro-a2(XI) protein. 33 3.7
L18987-1|AAA35498.1| 663|Homo sapiens alpha-2 type XI collagen ... 33 3.7
BX248309-1|CAM26005.1| 1622|Homo sapiens collagen, type XI, alph... 33 3.7
AL845446-3|CAI95551.1| 1650|Homo sapiens collagen, type XI, alph... 33 3.7
AL844527-6|CAI41834.1| 1650|Homo sapiens collagen, type XI, alph... 33 3.7
AL662824-16|CAI17611.2| 1650|Homo sapiens collagen, type XI, alp... 33 3.7
AL645940-2|CAI18063.2| 1650|Homo sapiens collagen type XI alpha ... 33 3.7
AL031228-16|CAA20240.1| 1736|Homo sapiens collagen type XI alpha... 33 3.7
AL031228-15|CAI95623.1| 1650|Homo sapiens collagen type XI alpha... 33 3.7
>U32169-3|AAC50215.1| 1629|Homo sapiens Pro-a2(XI) protein.
Length = 1629
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 502 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 561
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 562 HGEKGPQGKPGLP 574
>U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein.
Length = 1650
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 523 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 582
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 583 HGEKGPQGKPGLP 595
>U32169-1|AAC50214.1| 1736|Homo sapiens Pro-a2(XI) protein.
Length = 1736
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 609 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 668
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 669 HGEKGPQGKPGLP 681
>L18987-1|AAA35498.1| 663|Homo sapiens alpha-2 type XI collagen
protein.
Length = 663
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 465 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 524
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 525 HGEKGPQGKPGLP 537
>BX248309-1|CAM26005.1| 1622|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1622
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 495 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 554
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 555 HGEKGPQGKPGLP 567
>AL845446-3|CAI95551.1| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 523 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 582
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 583 HGEKGPQGKPGLP 595
>AL844527-6|CAI41834.1| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 523 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 582
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 583 HGEKGPQGKPGLP 595
>AL662824-16|CAI17611.2| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 523 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 582
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 583 HGEKGPQGKPGLP 595
>AL645940-2|CAI18063.2| 1650|Homo sapiens collagen type XI alpha 2
protein.
Length = 1650
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 523 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 582
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 583 HGEKGPQGKPGLP 595
>AL031228-16|CAA20240.1| 1736|Homo sapiens collagen type XI alpha 2
protein.
Length = 1736
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 609 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 668
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 669 HGEKGPQGKPGLP 681
>AL031228-15|CAI95623.1| 1650|Homo sapiens collagen type XI alpha 2
protein.
Length = 1650
Score = 32.7 bits (71), Expect = 3.7
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +2
Query: 1064 RGXLXPXYXPX-GGPPXXXCRKXPTXPXXRXXPQGXXXXPXXX----TSSLXXPPXAIXP 1228
RG L P P GPP P P PQG P T L P AI P
Sbjct: 523 RGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGP 582
Query: 1229 YGXXGPXXRXXAP 1267
+G GP + P
Sbjct: 583 HGEKGPQGKPGLP 595
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,713,732
Number of Sequences: 237096
Number of extensions: 3126730
Number of successful extensions: 4439
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4439
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 23074645414
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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