Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B08_e154_04.seq
         (1521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.64 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   0.64 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    26   0.64 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   0.64 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    26   0.64 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    26   0.64 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   0.64 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    26   0.64 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   0.64 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   5.9  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   7.9  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SXXSRXXGPPXRLXTXGXPPPXTPPXG-GGXKXPPRXKXXXSPLXXTGATP 761
           S  S     P  L T G PP  TPP          +     SPL  + + P
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SXXSRXXGPPXRLXTXGXPPPXTPPXG-GGXKXPPRXKXXXSPLXXTGATP 761
           S  S     P  L T G PP  TPP          +     SPL  + + P
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SXXSRXXGPPXRLXTXGXPPPXTPPXG-GGXKXPPRXKXXXSPLXXTGATP 761
           S  S     P  L T G PP  TPP          +     SPL  + + P
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SXXSRXXGPPXRLXTXGXPPPXTPPXG-GGXKXPPRXKXXXSPLXXTGATP 761
           S  S     P  L T G PP  TPP          +     SPL  + + P
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SXXSRXXGPPXRLXTXGXPPPXTPPXG-GGXKXPPRXKXXXSPLXXTGATP 761
           S  S     P  L T G PP  TPP          +     SPL  + + P
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SXXSRXXGPPXRLXTXGXPPPXTPPXG-GGXKXPPRXKXXXSPLXXTGATP 761
           S  S     P  L T G PP  TPP          +     SPL  + + P
Sbjct: 60  STSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 110


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SXXSRXXGPPXRLXTXGXPPPXTPPXG-GGXKXPPRXKXXXSPLXXTGATP 761
           S  S     P  L T G PP  TPP          +     SPL  + + P
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SXXSRXXGPPXRLXTXGXPPPXTPPXG-GGXKXPPRXKXXXSPLXXTGATP 761
           S  S     P  L T G PP  TPP          +     SPL  + + P
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 612 SXXSRXXGPPXRLXTXGXPPPXTPPXG-GGXKXPPRXKXXXSPLXXTGATP 761
           S  S     P  L T G PP  TPP          +     SPL  + + P
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/34 (26%), Positives = 10/34 (29%)
 Frame = +3

Query: 1032 PPPPXXXXQXRGXXGGAXXPRXSPPPXXXXXFXP 1133
            PPP            G   P  +PPP       P
Sbjct: 11   PPPAPQSAATPISSSGMTSPAAAPPPATTSSGSP 44


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 868 LXGGXPXXXPGGALPRXG 921
           L GG P   PG A  R G
Sbjct: 157 LVGGDPASSPGAAAGRTG 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,820
Number of Sequences: 336
Number of extensions: 2536
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45681550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)