Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B08_e154_04.seq
         (1521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.18 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 20/57 (35%), Positives = 21/57 (36%)
 Frame = +3

Query: 939  IPXPRPXPRGXSXPPXXPPXXGXXWXTXXPLPPPPXXXXQXRGXXGGAXXPRXSPPP 1109
            IP P P P     PP  PP  G       P PPPP       G    A  P+  P P
Sbjct: 749  IPVPPPAPI-MGGPPPPPPPPGVA-GAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 24/104 (23%), Positives = 27/104 (25%)
 Frame = +2

Query: 800  GXKXXGPRXPXRGXXXTXXXPPXXXGAPPXXXPGGRFPGXGVIXXXDPTPXXPPXGXXXP 979
            G     P  P R        P     + P   P         +      P  PP      
Sbjct: 262  GTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRN 321

Query: 980  PLXPSXGXLXVGDXXPXPPPPXXXXPXAGXXXXXXPPQXFXSPP 1111
               P  G        P PPPP      AG      PPQ   +PP
Sbjct: 322  RGKPPIGNGSSNSSLPPPPPPPRSN-AAG--SIPLPPQGRSAPP 362



 Score = 27.1 bits (57), Expect = 6.8
 Identities = 23/94 (24%), Positives = 25/94 (26%), Gaps = 5/94 (5%)
 Frame = +2

Query: 797  RGXKXXGPRXPXRGXXXTXXXPPXXXGAPPXXXPGGRFP-----GXGVIXXXDPTPXXPP 961
            R     G + P          PP    APP   PG   P     G        P P  P 
Sbjct: 367  RSAPSTGRQPPPLSSSRAVSNPP----APPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422

Query: 962  XGXXXPPLXPSXGXLXVGDXXPXPPPPXXXXPXA 1063
                 PP  P      +    P  PP     P A
Sbjct: 423  LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 28/120 (23%), Positives = 30/120 (25%), Gaps = 2/120 (1%)
 Frame = +1

Query: 559 PPPXRXXXRGGXPXQXGXLXPPGXKXPPXDWXPRGXXPPXPPXXGGXXNXPPGXNXGXPP 738
           PPP     RG  P   G         PP          P PP        PP  +     
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373

Query: 739 XQXPXXXXX*AXAXPXXIKKGXKXRXPPXALP-GXAXXPXX-PXPLXGGXPXXXPGGALP 912
            Q P      A + P         R  P   P G A      P P     P   P    P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,220
Number of Sequences: 5004
Number of extensions: 28853
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 852334820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)