Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B04_e122_04.seq
         (1469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    31   0.53 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    30   0.93 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    29   2.1  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
 Frame = +1

Query: 124 PRKRSYTQNDAEYASAKRKRLTEDMQLSVERLSRPRTTSATAKLSESTTPSKKEFTPSKD 303
           P ++S   N     S   K+ TE      E L   +TT         T   +KE TPSK 
Sbjct: 665 PSQQSTVSNHHRKESIPSKQPTEGQHARQESLPSQQTTE--------TKHLRKESTPSKQ 716

Query: 304 KTGGK-VSXTKLPNFAALHQKQFAKMESLDECQERKAKRARQ 426
            T G+      LP+      K   K ES+   Q  + + ARQ
Sbjct: 717 PTEGQHTRQESLPSQQTTETKHLRK-ESIPSKQPTEGQHARQ 757


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 217 LSRPRTTSATAKLSESTTPSKKEFTPSKDK 306
           + RP+    T  LS+ST   +K+FTP +D+
Sbjct: 120 MGRPQKIPHTVGLSKSTRKERKQFTPEEDE 149


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 24/89 (26%), Positives = 43/89 (48%)
 Frame = +1

Query: 127 RKRSYTQNDAEYASAKRKRLTEDMQLSVERLSRPRTTSATAKLSESTTPSKKEFTPSKDK 306
           RK + T ND  +  + R R       S E  S   +T  T+KLS++ + S K+ +P    
Sbjct: 620 RKYANTLNDLRHLKSSRNRKAT----SNETQSSSNSTE-TSKLSKNVSESGKDKSPHWHS 674

Query: 307 TGGKVSXTKLPNFAALHQKQFAKMESLDE 393
            GG ++   +   A+   ++  +M++ DE
Sbjct: 675 HGGSITGKSIVEQASSPLER--RMDAFDE 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,751
Number of Sequences: 5004
Number of extensions: 48626
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 818637862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)