Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B04_e122_04.seq
         (1469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   8.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   8.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   8.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 293 GVNSFFDGVVDSLNF 249
           GVN F+DG+ D + +
Sbjct: 471 GVNRFYDGIRDMIGY 485


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 293 GVNSFFDGVVDSLNF 249
           GVN F+DG+ D + +
Sbjct: 524 GVNRFYDGIRDMIGY 538


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 444  GYWRQELPRS 415
            G+WR E+PRS
Sbjct: 1226 GFWRVEMPRS 1235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,547
Number of Sequences: 438
Number of extensions: 3348
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51199500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)