Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B03_e114_03.seq
         (1559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   242   5e-64
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   233   3e-61
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...   143   3e-34
02_04_0580 + 24065830-24065967,24066163-24067425                       30   5.7  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  242 bits (593), Expect = 5e-64
 Identities = 107/160 (66%), Positives = 133/160 (83%)
 Frame = +3

Query: 75  AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 254
           AKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+GYPN
Sbjct: 84  AKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPN 143

Query: 255 LKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 434
           LKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC+EDL+HEI TVG  FK A+N
Sbjct: 144 LKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANN 203

Query: 435 FLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRR 554
           FLWPFKL  P GG +KK  HYV+GGD GNRED +NEL+RR
Sbjct: 204 FLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRR 243


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  233 bits (570), Expect = 3e-61
 Identities = 106/165 (64%), Positives = 133/165 (80%), Gaps = 6/165 (3%)
 Frame = +3

Query: 78  KLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNL 257
           KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+GYPNL
Sbjct: 84  KLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNL 143

Query: 258 KSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNIICVEDLIHEIFTVGEKF 419
           KSVREL+YKRG+ KLN +R+P+T+N +IE+       L K +IIC+EDL+HEI TVG  F
Sbjct: 144 KSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHF 203

Query: 420 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRR 554
           K A+NFLWPFKL  P GG +KK  HYV+GGD GNRE+ +NEL+RR
Sbjct: 204 KEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRR 248


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score =  143 bits (347), Expect = 3e-34
 Identities = 68/149 (45%), Positives = 98/149 (65%)
 Frame = +3

Query: 66  TRXAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 245
           T  +KL F IRI G   + P +R++L+  RL Q+  GVF++   AT+  L + EP+I +G
Sbjct: 83  TLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYG 142

Query: 246 YPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKY 425
           +PNLK+V++L+YK+G   L+ +  P+TSN LIEK L +  IIC+EDL+HEI +VG  F+ 
Sbjct: 143 FPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFRE 202

Query: 426 ASNFLWPFKLNNPTGGWRKKTIHYVDGGD 512
           ASNFL PFKL  P    + K   + DG +
Sbjct: 203 ASNFLMPFKLKCPERRLQMKKKPFKDGAE 231


>02_04_0580 + 24065830-24065967,24066163-24067425
          Length = 466

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
 Frame = +3

Query: 201 TVNMLRIAE--PYIAWGYPNLKSVRELVYKRG--FAKLNGKRVPITSNSLIEKRLSKQNI 368
           T+ +L +A+  P  A G+   +   E+ +     FA  NG+ +   S + I+  L     
Sbjct: 71  TMAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARC 130

Query: 369 ICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 482
             V +L +E+F        +S F++P+K+   T G  K
Sbjct: 131 TIVSELSNEVFD-SYVLSESSLFVYPYKIVIKTCGTTK 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,368,158
Number of Sequences: 37544
Number of extensions: 405869
Number of successful extensions: 945
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5035314872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)