Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B03_e114_03.seq
         (1559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   258   6e-69
Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical pr...    29   6.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  258 bits (633), Expect = 6e-69
 Identities = 112/161 (69%), Positives = 139/161 (86%)
 Frame = +3

Query: 78  KLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNL 257
           K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN 
Sbjct: 84  KVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNN 143

Query: 258 KSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNF 437
           K++ +L+YKRG+AK++G RVPIT N+++E+ L K NIIC+EDL HEI TVG  FK A+NF
Sbjct: 144 KTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNF 203

Query: 438 LWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRRXV 560
           LWPFKLNNPTGGW KKT H+V+GGDFGNRED++N LLR+ V
Sbjct: 204 LWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKMV 244


>Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical
           protein C17G1.3a protein.
          Length = 530

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +3

Query: 354 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDK 533
           +KQ II  ++ + EIF+  EKF   SN +W  +++NP   W    I     G    +  K
Sbjct: 71  AKQIIIDADEEVVEIFSQTEKF--LSN-MWTMEMSNPLMMWMNPRILTQLFGKQCTKVMK 127

Query: 534 VNELL 548
           ++ELL
Sbjct: 128 LSELL 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,382,537
Number of Sequences: 27780
Number of extensions: 333523
Number of successful extensions: 792
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4504441732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)