Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_B03_e114_03.seq
(1559 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 235 4e-62
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 235 4e-62
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 235 6e-62
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 235 6e-62
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 235 6e-62
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 233 3e-61
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 144 1e-34
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 30 3.6
At2g35540.1 68415.m04353 DNAJ heat shock N-terminal domain-conta... 30 3.6
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 6.3
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 6.3
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 8.3
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 235 bits (576), Expect = 4e-62
Identities = 104/160 (65%), Positives = 131/160 (81%)
Frame = +3
Query: 75 AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 254
AKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPN
Sbjct: 86 AKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPN 145
Query: 255 LKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 434
LKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IICVEDLIHEI TVG FK A+N
Sbjct: 146 LKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANN 205
Query: 435 FLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRR 554
FLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+RR
Sbjct: 206 FLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRR 245
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 235 bits (576), Expect = 4e-62
Identities = 104/160 (65%), Positives = 131/160 (81%)
Frame = +3
Query: 75 AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 254
AKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPN
Sbjct: 81 AKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPN 140
Query: 255 LKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 434
LKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IICVEDLIHEI TVG FK A+N
Sbjct: 141 LKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANN 200
Query: 435 FLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRR 554
FLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+RR
Sbjct: 201 FLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRR 240
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 235 bits (575), Expect = 6e-62
Identities = 104/160 (65%), Positives = 130/160 (81%)
Frame = +3
Query: 75 AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 254
AKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPN
Sbjct: 83 AKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPN 142
Query: 255 LKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 434
LKSV+EL+YKRGF KLN +R +T NS++++ L K IICVEDLIHEI TVG FK A+N
Sbjct: 143 LKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANN 202
Query: 435 FLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRR 554
FLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+RR
Sbjct: 203 FLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRR 242
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 235 bits (575), Expect = 6e-62
Identities = 104/160 (65%), Positives = 130/160 (81%)
Frame = +3
Query: 75 AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 254
AKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPN
Sbjct: 83 AKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPN 142
Query: 255 LKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 434
LKSV+EL+YKRGF KLN +R +T NS++++ L K IICVEDLIHEI TVG FK A+N
Sbjct: 143 LKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANN 202
Query: 435 FLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRR 554
FLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+RR
Sbjct: 203 FLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRR 242
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 235 bits (575), Expect = 6e-62
Identities = 104/160 (65%), Positives = 130/160 (81%)
Frame = +3
Query: 75 AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 254
AKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPN
Sbjct: 83 AKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPN 142
Query: 255 LKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 434
LKSV+EL+YKRGF KLN +R +T NS++++ L K IICVEDLIHEI TVG FK A+N
Sbjct: 143 LKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANN 202
Query: 435 FLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRR 554
FLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+RR
Sbjct: 203 FLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRR 242
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 233 bits (569), Expect = 3e-61
Identities = 102/160 (63%), Positives = 130/160 (81%)
Frame = +3
Query: 75 AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 254
AKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +G+PN
Sbjct: 81 AKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPN 140
Query: 255 LKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 434
LKSV+EL+YKRG+ KLN +R+ +T NS++E+ L K IIC EDLIHEI TVG FK A+N
Sbjct: 141 LKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANN 200
Query: 435 FLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRR 554
FLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+RR
Sbjct: 201 FLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRR 240
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 144 bits (350), Expect = 1e-34
Identities = 66/160 (41%), Positives = 103/160 (64%), Gaps = 2/160 (1%)
Frame = +3
Query: 81 LAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 260
L F+IRI+G N + PK +++L +L+ + GVF + + L +PY+ +GYPN K
Sbjct: 87 LVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDK 146
Query: 261 SVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFL 440
SV++L+YK+G + G VP+T N++IE+ L + I+ +EDL++EI VG+ F+ FL
Sbjct: 147 SVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFL 206
Query: 441 WPFKLNNPTGG--WRKKTIHYVDGGDFGNREDKVNELLRR 554
P KLN P RKK + + +GGD GNREDK+N+L+ +
Sbjct: 207 GPLKLNKPVADVLHRKKQV-FSEGGDTGNREDKINDLISK 245
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 30.3 bits (65), Expect = 3.6
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -1
Query: 425 VLELLTDSKYLMDEILNADDVL----FAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTL 258
V ELL+++ L DE+L DDVL F SLL E RD V L TL
Sbjct: 2031 VQELLSENLNLHDELLRKDDVLKGLSFDLSLLQESASNSRDKKDETKEIMVHVEALEKTL 2090
Query: 257 QVGVAPCNIGLSDTKHVHCGLVETNE 180
+ +S + + L E+ E
Sbjct: 2091 ALKTFELEDAVSHAQMLEVRLQESKE 2116
>At2g35540.1 68415.m04353 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226:
DnaJ domain
Length = 575
Score = 30.3 bits (65), Expect = 3.6
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -2
Query: 454 SLNGHRKLLAYLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVIGTRFPFS 299
SLN + +++L+F ISWM+ S+ M C F +SE +I PFS
Sbjct: 396 SLNPFKVWISWLDFESEKLISWMKISSSHMPC--GRFRVSEKALIEQVKPFS 445
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 6.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 420 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 515
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 6.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 420 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 515
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.1 bits (62), Expect = 8.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 297 KLNGKRVPITSNSLIEKRLSKQNIICVEDL 386
K+N + + S IEK LS N+ C+E L
Sbjct: 438 KMNNNTISVDSTICIEKHLSAMNLRCIERL 467
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,473,885
Number of Sequences: 28952
Number of extensions: 313950
Number of successful extensions: 720
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4192787520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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