Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B02_e106_04.seq
         (1385 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   3.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   7.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   9.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   9.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
 Frame = +1

Query: 1252 PPXAXXXTSXXSXXXPXXXTX-PXXXPTPXPPPXPXPXXRPP 1374
            P  +    S  +   P   T  P   PT   PP P    +PP
Sbjct: 1345 PAQSTTSVSTTTSWNPGSTTNYPEWQPTEWHPPIPPTSEKPP 1386


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
            protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 1327 PTPXPPPXPXPXXRPPXL 1380
            P P  PP P P   PP +
Sbjct: 176  PLPQVPPLPLPPIFPPTM 193


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
            neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 1315 PXXXPTPXPPP 1347
            P   PTP PPP
Sbjct: 95   PTTPPTPSPPP 105


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
            protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 15/79 (18%), Positives = 20/79 (25%)
 Frame = +1

Query: 1135 PXKXXATQXPPXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXTX 1314
            P K  A++  P   P +        P   P+      PP       +       P     
Sbjct: 201  PTKVKASKASPAAAPRSVAT-----PTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNIT 255

Query: 1315 PXXXPTPXPPPXPXPXXRP 1371
            P    T      P P   P
Sbjct: 256  PHGSNTSSLITTPSPSASP 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,560
Number of Sequences: 336
Number of extensions: 3799
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 41309922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)