Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_B02_e106_04.seq
(1385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.010
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.023
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.28
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.50
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 2.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 28 3.5
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 8.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 36.3 bits (80), Expect = 0.010
Identities = 21/109 (19%), Positives = 30/109 (27%)
Frame = +1
Query: 1048 PXXHPTXXEXSKXXLAXXXTSXXWXXXDGPXKXXATQXPPXXXPPAXGXXXGPXPPXTPS 1227
P + + + L TS P T P P + P PP + S
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTS 323
Query: 1228 AXXXXXPPPPXAXXXTSXXSXXXPXXXTXPXXXPTPXPPPXPXPXXRPP 1374
+ P P + + P + PT PP PP
Sbjct: 324 STGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPT-VPPTSTSSTSTPP 371
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/102 (22%), Positives = 27/102 (26%), Gaps = 2/102 (1%)
Frame = +1
Query: 1048 PXXHPTXXEXSKXXLAXXXTSXXWXXXDGPXKXXATQXPPXXXPPAXGXXXGPXPPXTP- 1224
P PT + TS P +T P G P P P
Sbjct: 303 PTVPPTSTSSTSTPPPPASTSST-GTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPP 361
Query: 1225 -SAXXXXXPPPPXAXXXTSXXSXXXPXXXTXPXXXPTPXPPP 1347
S PPPP + T S P T + PP
Sbjct: 362 TSTSSTSTPPPPASTSSTGTSS--SPLLSTSTSCTTSTSIPP 401
Score = 32.3 bits (70), Expect = 0.16
Identities = 17/81 (20%), Positives = 24/81 (29%)
Frame = +1
Query: 1132 GPXKXXATQXPPXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXT 1311
G +T P P + P PP + S+ P P + + P +
Sbjct: 238 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNS 297
Query: 1312 XPXXXPTPXPPPXPXPXXRPP 1374
PT PP PP
Sbjct: 298 TTPVTPT-VPPTSTSSTSTPP 317
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Frame = +1
Query: 1132 GPXKXXATQXPPXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXT 1311
G +T P P + P PP + S+ P P + S P +
Sbjct: 182 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP-TTSTSCTTSTSIPTGGS 240
Query: 1312 XPXXXP-TPXPPPXPXPXXRPP 1374
P TP PP P
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIP 262
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.023
Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Frame = +1
Query: 1153 TQXPPXXXPPAXGXXXGPX-PPXTPSAX---XXXXPPPPXAXXXTSXXSXXXPXXXTXPX 1320
T PP PP+ P PP P + PP P + P P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 1321 XXPTPXPPPXPXP 1359
P P P P P P
Sbjct: 472 AAPAPPPAPAPAP 484
Score = 31.9 bits (69), Expect = 0.22
Identities = 19/72 (26%), Positives = 20/72 (27%)
Frame = +1
Query: 1165 PXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXTXPXXXPTPXPP 1344
P PP G PP S+ PP P P P P P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP-PVPT 419
Query: 1345 PXPXPXXRPPXL 1380
P P PP L
Sbjct: 420 PPSLPPSAPPSL 431
Score = 30.3 bits (65), Expect = 0.66
Identities = 20/77 (25%), Positives = 25/77 (32%)
Frame = +1
Query: 1150 ATQXPPXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXTXPXXXP 1329
A + P PP G P S+ PPPP + P + P P
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP---P 362
Query: 1330 TPXPPPXPXPXXRPPXL 1380
P P P +PP L
Sbjct: 363 PPPPRSAPSTGRQPPPL 379
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/68 (25%), Positives = 18/68 (26%)
Frame = +1
Query: 1150 ATQXPPXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXTXPXXXP 1329
A PP PPA P P +A PP P P
Sbjct: 384 AVSNPPAP-PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMG 442
Query: 1330 TPXPPPXP 1353
P PP P
Sbjct: 443 APAAPPLP 450
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.28
Identities = 23/88 (26%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Frame = +1
Query: 1135 PXKXXATQXP-PXXXPP----AXGXXXGPXPPXTPSAXXXXXPPP---PXAXXXTSXXSX 1290
P A P P PP + G P P PS+ P P P +
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094
Query: 1291 XXPXXXTXPXXXPTPXPPPXPXPXXRPP 1374
P P P+ PP P P PP
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/72 (26%), Positives = 21/72 (29%)
Frame = +1
Query: 1165 PXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXTXPXXXPTPXPP 1344
P PA G P P P PP T+ P P PT P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP-PVPTPSAGLPPVPVPTAKAP 1237
Query: 1345 PXPXPXXRPPXL 1380
P P P P +
Sbjct: 1238 PVPAPSSEAPSV 1249
Score = 27.9 bits (59), Expect = 3.5
Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 5/85 (5%)
Frame = +1
Query: 1135 PXKXXATQXP-PXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXT 1311
P A P P P G P PS P P A P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 1312 XPXXXPTPXP----PPXPXPXXRPP 1374
P P P PP P P PP
Sbjct: 1175 SSGIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 26.6 bits (56), Expect = 8.1
Identities = 20/73 (27%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Frame = +1
Query: 1165 PXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXTXPXXXPTPXP- 1341
P PP P P PS P P A S P P P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPK-PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS 1137
Query: 1342 --PPXPXPXXRPP 1374
PP P P P
Sbjct: 1138 GAPPVPKPSVAAP 1150
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.50
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +1
Query: 1135 PXKXXATQXP-PXXXPPAXGXXXGPXPPXTPSAXXXXXPPPP 1257
P T P P PP GP PP P PPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 2.0
Identities = 21/76 (27%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Frame = +1
Query: 1162 PPXXXPPAXGXXXG---PXPPXTPSAX---XXXXPPPPXAXXXTSXXSXXXPXXXTXPXX 1323
PP PA P PP P A P S P T
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQA 232
Query: 1324 XPTPXPPPXPXPXXRP 1371
P P PPP P P P
Sbjct: 233 DPLPAPPPPPPPTLPP 248
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 1263 GGXRGXXXXXXGGXXXXGGGPXXAXXXGXXGRRG 1162
GG RG GG GGG A G G RG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARG 45
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = -3
Query: 1359 GGGXXRGXRGGXXXGXSXXXXXGXXVX--GXXXXGGXRGXXXXXXGGXXXXGGG 1204
G G G RGG G G G GG RG GG GG
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/42 (26%), Positives = 12/42 (28%)
Frame = +1
Query: 1246 PPPPXAXXXTSXXSXXXPXXXTXPXXXPTPXPPPXPXPXXRP 1371
PPPP + P PPP P P P
Sbjct: 366 PPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAP 407
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/41 (29%), Positives = 13/41 (31%)
Frame = +1
Query: 1246 PPPPXAXXXTSXXSXXXPXXXTXPXXXPTPXPPPXPXPXXR 1368
PPP +S S P P PPP P R
Sbjct: 191 PPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKPR 231
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 8.1
Identities = 19/75 (25%), Positives = 23/75 (30%)
Frame = +1
Query: 1135 PXKXXATQXPPXXXPPAXGXXXGPXPPXTPSAXXXXXPPPPXAXXXTSXXSXXXPXXXTX 1314
P A P PPA P P PS PP + + S P +
Sbjct: 1472 PSSAPAPPAPVSQLPPAVPNV--PVPSMIPSVAQQ----PPSSVAPATAPSSTLPPSQSS 1525
Query: 1315 PXXXPTPXPPPXPXP 1359
P+P PP P
Sbjct: 1526 FAHVPSPAPPAPQHP 1540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,837
Number of Sequences: 5004
Number of extensions: 55373
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 767050708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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