Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B01_e098_03.seq
         (1423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    28   3.6  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.8  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    27   4.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   6.3  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 491  PLYLSKISVLRAKFLDEGTKRSRLGLDLVSKANGQAV 601
            PL LSKI+   +  +  GTKR  +GL+L   A  Q V
Sbjct: 970  PLLLSKIT--SSFLISNGTKRENIGLNLKFDARNQKV 1004


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 124 DSLIGRRQLVLTFQXLVPNXLQPGGXP 44
           DSL G+R        +VP+   PGG P
Sbjct: 233 DSLFGKRSAAQAMATVVPSVSTPGGTP 259


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 70  SARGIEM*ALAAVYLLVSHXXXXXXXXXLKMYSIYIFML*HIPKYCMVFKKY 225
           SA G +M  LAA++LL+           L + S  +F+L ++ +Y  +F +Y
Sbjct: 5   SALG-DMAHLAAIFLLLHRMKKSKTCSGLSLKSHLLFLLVYVTRYLNLFWRY 55


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 680 EILFHQDNAPS-HTSAVAMAKIHELRFQLLDHSPYSPDLAPSDF 552
           E LFH     S HT+ +  + +  +    L+H PY  DLA + F
Sbjct: 710 EFLFHNITVSSKHTAVIFTSDLLMVLKIALNHPPYFDDLATTTF 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,021,681
Number of Sequences: 5004
Number of extensions: 76519
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 790896844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)