Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B01_e098_03.seq
         (1423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0217 + 16512689-16512838,16514353-16515444                       32   0.96 
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129...    31   2.2  
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065...    29   6.7  

>02_03_0217 + 16512689-16512838,16514353-16515444
          Length = 413

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 23/61 (37%), Positives = 32/61 (52%)
 Frame = +2

Query: 533 LDEGTKRSRLGLDLVSKANGQAVETVIRGFSPWQPLRCETVRCLGETGFLFCKRGRFSAN 712
           L++ TK  +LGL  V+K N QAV +VI   S    L   ++R  G+ G   C   +FS  
Sbjct: 198 LEKLTKLHKLGLTGVNKENSQAVMSVIANLSLLHSL---SLRAEGDQGLQGCLDHKFSPP 254

Query: 713 S 715
           S
Sbjct: 255 S 255


>12_02_0931 +
           24512496-24512567,24512705-24512806,24512939-24512984,
           24513292-24513355,24513997-24514348,24514497-24514749,
           24515069-24515311,24515399-24515518,24515710-24516158
          Length = 566

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 689 CKKEILFHQDNAPSHTSAVAMAKIHELR--FQLLDHSPYSPDLAPS 558
           C    L+ QD  P H SAV  A IH +   F+L    P S DLA S
Sbjct: 298 CMSPYLYIQDEKPFHASAVCAAAIHSITVPFRLQRTGP-SSDLAHS 342


>12_02_0995 +
           25104303-25104486,25105164-25105275,25106466-25106554,
           25106635-25106703,25106784-25106913,25107073-25107231,
           25107364-25107736,25108070-25108182,25108429-25108624,
           25108855-25109288,25109360-25109495,25109668-25111086
          Length = 1137

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 416 APISVTRPNSTRRFS-LQNNYSRR*LPLYLSKISVLRAKFLDEGTKRSRLGLDLVSKANG 592
           A + V R  + R F  L   Y R  + +YLS +  +  +F+DE  +RS+L   +  K   
Sbjct: 189 AQVQVIREKADRPFRCLDGQYRRELVRVYLSNVEQICRRFIDE--RRSKLSRLIEDKLRW 246

Query: 593 QAVETVIRGFSP 628
            +      G  P
Sbjct: 247 SSFNAFWLGMDP 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,927,168
Number of Sequences: 37544
Number of extensions: 475860
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4501617904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)