Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_B01_e098_03.seq
(1423 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 35 0.18
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.18
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.42
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033) 33 0.73
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 32 1.3
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6) 31 3.0
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 30 5.2
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 34.7 bits (76), Expect = 0.18
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Frame = -3
Query: 707 RKNGHVCKKEILFHQDNAPSHTSAVAMAKIHELRFQL--------LDHSPYSPDLAPSDF 552
R+ G V + F QD A HT+ +A + + RF+ ++ +P+SPDL P DF
Sbjct: 264 RRRG-VVRASQWFQQDGATPHTANGTIAWLRQ-RFEEKLISRRCDVEWAPHSPDLNPPDF 321
Query: 551 FLFPHLKISLGGQRFSTNKEAITFVNNYFAVKNAEYYLDGLQRWEHHREKCIELQG 384
+L+ LK ++ T ++ T + E + +Q + + C+E G
Sbjct: 322 YLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLERNG 377
>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 34.7 bits (76), Expect = 0.18
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Frame = -3
Query: 707 RKNGHVCKKEILFHQDNAPSHTSAVAMAKIHELRFQL--------LDHSPYSPDLAPSDF 552
R+ G V + F QD A HT+ +A + + RF+ ++ +P+SPDL P DF
Sbjct: 40 RRRG-VVRASQWFQQDGATPHTANGTIAWLRQ-RFEEKLISRRCDVEWAPHSPDLNPPDF 97
Query: 551 FLFPHLKISLGGQRFSTNKEAITFVNNYFAVKNAEYYLDGLQRWEHHREKCIELQGDYVK 372
+L+ LK ++ T ++ T + E + +Q + + C++ G +++
Sbjct: 98 YLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLQRNGGHLE 157
>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 33.5 bits (73), Expect = 0.42
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Frame = -3
Query: 707 RKNGHVCKKEILFHQDNAPSHTSAVAMAKIHELRFQL--------LDHSPYSPDLAPSDF 552
R+ G V + F QD A HT+ +A + + RF+ ++ +P+SPDL P DF
Sbjct: 40 RRRG-VVRASQWFQQDGATPHTANGTIAWLRQ-RFEEKLISRRCDVEWAPHSPDLNPPDF 97
Query: 551 FLFPHLKISLGGQRFSTNKEAITFVNNYFAVKNAEYYLDGLQRWEHHREKCIELQG 384
+L+ LK ++ T ++ T + E + +Q + + C++ G
Sbjct: 98 YLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLQRNG 153
>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
Length = 999
Score = 32.7 bits (71), Expect = 0.73
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Frame = -3
Query: 707 RKNGHVCKKEILFHQDNAPSHTSAVAMAKIHELRFQL--------LDHSPYSPDLAPSDF 552
R+ G V + F QD A HT+ +A + + RF+ ++ +P+SPDL P DF
Sbjct: 649 RRRG-VVRASQWFQQDGATPHTANETIAWLRQ-RFEGRLISRRCDVEWAPHSPDLNPPDF 706
Query: 551 FLFPHLK 531
+L+ LK
Sbjct: 707 YLWGFLK 713
>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 153
Score = 31.9 bits (69), Expect = 1.3
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = -3
Query: 707 RKNGHVCKKEILFHQDNAPSHTSAVAMAKIHELRFQL--------LDHSPYSPDLAPSDF 552
R+ G V + F QD A HT+ +A + + RF+ ++ P+SPDL P DF
Sbjct: 40 RRRG-VVRASQWFQQDGATPHTANGTIAWLRQ-RFEEKLISRRCDVEWVPHSPDLNPPDF 97
Query: 551 FLFPHLKISLGGQRFSTNKEAITFVNNYFAVKNAEYYLDGLQRWEHHREKCIE 393
+L+ LK ++ T ++ T + E + +Q + + C+E
Sbjct: 98 YLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLE 150
>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
Length = 267
Score = 30.7 bits (66), Expect = 3.0
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Frame = -3
Query: 665 QDNAPSHTSAVAMAKIHELRFQL--------LDHSPYSPDLAPSDFFLFPHLKISLGGQR 510
QD A HT+ +A + + RF+ ++ +P+SPDL P DF+L+ LK ++
Sbjct: 1 QDGATPHTANGTIAWLRQ-RFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQGN 59
Query: 509 FSTNKEAITFVNNYFAVKNAEYYLDGLQRWEHHREKCIELQG 384
T ++ T + E + +Q + + C++ G
Sbjct: 60 PQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLQRNG 101
>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 254
Score = 29.9 bits (64), Expect = 5.2
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = -3
Query: 707 RKNGHVCKKEILFHQDNAPSHTSAVAMAKIHELRFQL--------LDHSPYSPDLAPSDF 552
R+ G V + F QD A HT+ +A + + RF+ ++ + +SPDL P DF
Sbjct: 40 RRRG-VVRASQWFQQDGATPHTANGTIAWLRQ-RFEEKLISRRCDVEWAQHSPDLNPPDF 97
Query: 551 FLFPHLKISLGGQRFSTNKEAITFVNNYFAVKNAEYYLDGLQRWEHHREKCIE 393
+L+ LK ++ T ++ T + E + +Q + + C+E
Sbjct: 98 YLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLE 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,176,995
Number of Sequences: 59808
Number of extensions: 540633
Number of successful extensions: 1015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4554257476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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