Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B01_e098_03.seq
         (1423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    93   5e-21
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          39   1e-04
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          33   0.008

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 93.1 bits (221), Expect = 5e-21
 Identities = 42/104 (40%), Positives = 65/104 (62%)
 Frame = -3

Query: 686 KKEILFHQDNAPSHTSAVAMAKIHELRFQLLDHSPYSPDLAPSDFFLFPHLKISLGGQRF 507
           +K ++FH DNA  HTS V   K+ EL + +L H PYSPDLAPSD+FLF  L+ SL G+ F
Sbjct: 237 RKGVVFHHDNARPHTSLVTRQKLLELGWDVLPHPPYSPDLAPSDYFLFRSLQNSLNGKNF 296

Query: 506 STNKEAITFVNNYFAVKNAEYYLDGLQRWEHHREKCIELQGDYV 375
           + + +  +++  +FA KN ++Y  G+       +K I+  G ++
Sbjct: 297 NNDDDIKSYLIQFFANKNQKFYERGIMMLPERWQKVIDQNGQHI 340



 Score = 30.7 bits (66), Expect = 0.032
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 831 KVMVXVFCDSHGVILIXYIQKGKXITGAYYASLFDNLKAEFAEKRPRLQKRNPV 670
           KV++ V+ D  G++    +   + I    Y      L     EKRP L  R  V
Sbjct: 187 KVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKGV 240


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 686 KKEILFHQDNAPSHTSAVAMAKIHELRFQLLDHSP 582
           +K ++FH DNA  HTS V   K+ EL + +L H P
Sbjct: 115 RKSVVFHHDNARPHTSLVTRQKLLELGWDVLPHPP 149



 Score = 31.5 bits (68), Expect = 0.018
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 831 KVMVXVFCDSHGVILIXYIQKGKXITGAYYASLFDNLKAEFAEKRPRLQKRNPV 670
           KV++ V+ D  G++    +   + I    Y      L     EKRP L  R  V
Sbjct: 65  KVLLSVWWDYKGIVYFELLSPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKSV 118


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 32.7 bits (71), Expect = 0.008
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 686 KKEILFHQDNAPSHTSAVAMAKIHELRFQLLDHS 585
           +K ++FH D+A  HT  V   K+ EL + +L HS
Sbjct: 116 RKGVVFHHDDARPHTYLVTRQKLLELGWDVLPHS 149



 Score = 26.2 bits (55), Expect = 0.69
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -2

Query: 831 KVMVXVFCDSHGVILIXYIQKGKXITGAYYASLFDNLKAEFAEKRPRLQKRNPV 670
           KV++ V+ D  G++    +   + I    Y      L     EKR  L  R  V
Sbjct: 66  KVLLLVWWDHKGIVYFELLPPNRTINSVVYIEHLTKLNNAIEEKRFELTNRKGV 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,699
Number of Sequences: 438
Number of extensions: 5477
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 49586019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)