Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_B01_e098_03.seq
         (1423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26540.1 68417.m03823 protein kinase family protein Three fal...    29   5.6  

>At4g26540.1 68417.m03823 protein kinase family protein Three false
           introns were added with non-consensus splice sites to
           circumenvent frameshifts likely due to sequencing
           errors; this is extremely unusual and is under
           investigation.
          Length = 1089

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
 Frame = +2

Query: 410 GDAPISVTRPNSTRRFSLQNNYSRR*LPLYLSKISVLRAKFLDEGTKRSRLGLDLVSKAN 589
           GD P+ + R    +  SL  N     +P+ +  +S L    L +      +   +    N
Sbjct: 131 GDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDNKLSGEIPRSIGELKN 190

Query: 590 GQAVETV----IRGFSPWQPLRCETVRCLG 667
            Q +       +RG  PW+   CE +  LG
Sbjct: 191 LQVLRAGGNKNLRGELPWEIGNCENLVMLG 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,211,225
Number of Sequences: 28952
Number of extensions: 392510
Number of successful extensions: 788
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3749412288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)