Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A10_e169_02.seq
         (1499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   207   3e-54
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   207   3e-54
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    52   2e-07
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    29   1.7  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  207 bits (505), Expect = 3e-54
 Identities = 95/140 (67%), Positives = 118/140 (84%)
 Frame = +1

Query: 121 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 300
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 301 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 480
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 481 CEPKKFGGPGARARYQKSYR 540
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  207 bits (505), Expect = 3e-54
 Identities = 95/140 (67%), Positives = 118/140 (84%)
 Frame = +1

Query: 121 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 300
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 301 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 480
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 481 CEPKKFGGPGARARYQKSYR 540
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 41/128 (32%), Positives = 60/128 (46%)
 Frame = +1

Query: 142 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 321
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 322 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 501
           GGG   Q  A+  AISK+LI      + E S K+     V  D   ++ D R+ E KK G
Sbjct: 71  GGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTG 119

Query: 502 GPGARARY 525
            P AR +Y
Sbjct: 120 QPKARKKY 127


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 533 PTVNIISICIVWYRLDLFSLINAIPLG 613
           P V+ +++C+ W ++  FSL+   P G
Sbjct: 434 PEVSAVTLCLFWNKMTRFSLVVGAPFG 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,311,798
Number of Sequences: 5004
Number of extensions: 78066
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 838459602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)