Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_A10_e169_02.seq
(1499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 214 1e-55
11_01_0155 - 1287003-1287452 214 1e-55
03_06_0097 - 31632238-31632525,31633386-31633769 43 7e-04
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.027
08_02_1475 - 27369088-27369199,27369404-27369651,27369734-273699... 30 4.1
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 30 5.4
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 7.2
>12_01_0152 - 1168928-1169377
Length = 149
Score = 214 bits (523), Expect = 1e-55
Identities = 95/143 (66%), Positives = 119/143 (83%)
Frame = +1
Query: 112 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 291
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 292 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 471
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 472 PRRCEPKKFGGPGARARYQKSYR 540
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 214 bits (523), Expect = 1e-55
Identities = 95/143 (66%), Positives = 119/143 (83%)
Frame = +1
Query: 112 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 291
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 292 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 471
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 472 PRRCEPKKFGGPGARARYQKSYR 540
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 42.7 bits (96), Expect = 7e-04
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Frame = +1
Query: 124 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 294
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 295 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 474
D+ V V GGG Q AI +++AL+ + A+K ++ LL D
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201
Query: 475 RRCEPKKFGGPGARARYQKSYR 540
R E KK G AR R Q S R
Sbjct: 202 RIVERKKAGLKKARKRPQFSKR 223
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 37.5 bits (83), Expect = 0.027
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +1
Query: 142 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 321
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 322 GGGHVAQVYAIRQAISKAL 378
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>08_02_1475 -
27369088-27369199,27369404-27369651,27369734-27369900,
27370386-27370621,27371340-27371620
Length = 347
Score = 30.3 bits (65), Expect = 4.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 669 GGARYPISPYSESYYNSLAVGLQRRDWGKPWRYPT 773
GGA Y +PY SYY+ +RR W PW PT
Sbjct: 12 GGAGYQYAPYGGSYYDE-----ERRWW--PWLVPT 39
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 29.9 bits (64), Expect = 5.4
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 336 CTGLCNQTSHL*SPYRFLPEICRRSI*EGDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRP 515
CTG+ Q S S Y F +I + + G+ + S K R +++R ++ + RRP
Sbjct: 725 CTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFLRRP 784
Query: 516 CQIP 527
++P
Sbjct: 785 VRLP 788
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 159 NCGSILQTRTWSVACKWTPPRPGRTQTSS 245
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,633,721
Number of Sequences: 37544
Number of extensions: 590069
Number of successful extensions: 1404
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4803272712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -