Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A10_e169_02.seq
         (1499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   223   2e-58
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           223   3e-58
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   221   7e-58
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    44   2e-04
At1g11480.1 68414.m01319 eukaryotic translation initiation facto...    29   6.0  

>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  223 bits (545), Expect = 2e-58
 Identities = 99/145 (68%), Positives = 127/145 (87%)
 Frame = +1

Query: 106 ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 285
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 286 KFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 465
           +F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 466 ADPRRCEPKKFGGPGARARYQKSYR 540
           ADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  223 bits (544), Expect = 3e-58
 Identities = 98/145 (67%), Positives = 127/145 (87%)
 Frame = +1

Query: 106 ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 285
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 286 KFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 465
           +F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 466 ADPRRCEPKKFGGPGARARYQKSYR 540
           ADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  221 bits (541), Expect = 7e-58
 Identities = 96/139 (69%), Positives = 125/139 (89%)
 Frame = +1

Query: 124 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 303
           ++VQ FGRKKTATAV YCKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 304 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRC 483
           +R+   GGG+ ++VYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 484 EPKKFGGPGARARYQKSYR 540
           E KKFGGPGARAR+QKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 28/79 (35%), Positives = 42/79 (53%)
 Frame = +1

Query: 142 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 321
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 322 GGGHVAQVYAIRQAISKAL 378
           GGG   QV AI+  IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387


>At1g11480.1 68414.m01319 eukaryotic translation initiation
           factor-related contains weak similarity to
           Swiss-Prot:P23588 eukaryotic translation initiation
           factor 4B (eIF-4B) [Homo sapiens]
          Length = 578

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 550 NDINGRISGIWHGRLDHRISWARNDEGQRP 461
           N ++G  S IW+GR +  +S A N+ GQ P
Sbjct: 146 NSVSGNHSNIWNGRKE--VSVANNEPGQSP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,519,666
Number of Sequences: 28952
Number of extensions: 438363
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4000015680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)