Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A09_e161_01.seq
         (1550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    31   0.43 
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    30   0.75 
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    29   1.7  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    27   5.3  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   9.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   9.2  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 542 VNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAHKRIH 667
           +N   +A    Q  + N +F+CD C +MF   + L  HKR +
Sbjct: 120 LNGTSVANASKQPNMPNATFRCDKCDMMFVKQSGLTNHKRTY 161


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 587 SNISFKCDVCGLMFGHLTLLNAHKRIHA 670
           S  +F C+VC   FG +T+  AHK+  A
Sbjct: 239 STEAFYCEVCQKFFGKITVFEAHKKSKA 266


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 590 NISFKCDVCGLMFGHLTLLNAH 655
           N++F CD CG  FG+  +L  H
Sbjct: 264 NMAFHCDSCGTKFGYKHMLQRH 285


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 338 YSFLAIFASDAPGIAVSALCLPVLCSL*TSCRYNHCLIAIIFLDKLPIYLKKII-ICHNF 162
           YSF A + S+   I +  +C+P+L  L T+    H  +  +   KL I +  ++ + +  
Sbjct: 8   YSFYAAYHSNPVNIKIHQVCIPLL--LLTALVLLHNFVITLINSKLQINVAHLVGLAYQI 65

Query: 161 IYIS 150
            Y++
Sbjct: 66  FYVT 69


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 533 YALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNA 652
           + +  + Q   NG++NT  +   K +  G++FG L L N+
Sbjct: 465 HQIATRTQELENGMENTKDSTLMKPEALGIIFGPLLLGNS 504


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 337 YRKCTKKCSTNTATAGISYILLYNKCK 417
           Y KCT    ++     ++Y +LY KCK
Sbjct: 507 YAKCTLNLDSDFENGILTYEILYKKCK 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,034,802
Number of Sequences: 5004
Number of extensions: 64418
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 872156560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)