Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A09_e161_01.seq
         (1550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1614 - 38648495-38649706                                         33   0.61 
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068...    33   0.80 
01_06_1280 - 35959452-35960105                                         31   1.9  
03_04_0187 - 18236041-18236643                                         31   3.2  
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    30   5.7  

>01_06_1614 - 38648495-38649706
          Length = 403

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 584 ISNISFKCDVCGLMFGHLTLLNAHKRIHAXDAD 682
           ++ ++F C VC   FG    ++ H R+H  D D
Sbjct: 100 VARVAFPCHVCSKEFGSRKAVHGHMRVHQADKD 132


>06_03_0815 -
           24905641-24905874,24905974-24906044,24906678-24906847,
           24906862-24906955,24907904-24907948,24908599-24909631
          Length = 548

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 253 VYNEHSTGRHSADTAIPGASDAKIARKEYRKCTKKCSTNTATAGISYILLYNKCKYDWKN 432
           +Y+  S    S   A   A DAK  ++ Y++CT   S+  +  G+SY+ L+   K  W N
Sbjct: 1   MYSSSSMKPSSPSQANQDADDAKTYKELYQRCTDLVSSWPSRQGLSYLQLFRHEK-GWYN 59


>01_06_1280 - 35959452-35960105
          Length = 217

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 602 KCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVSTGN 724
           +C VCGL F     L  H R H  +A++  T   T    G+
Sbjct: 123 ECPVCGLEFPIGQALGGHMRRHRAEAEAAATTTTTTTKNGD 163


>03_04_0187 - 18236041-18236643
          Length = 200

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 602 KCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVSTGN 724
           +C VC   F     L  HKR H  D  S ++V A+   +G+
Sbjct: 110 RCSVCHRTFATGQALGGHKRCHYWDGLSVVSVTASASGSGS 150


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 193 YIGSLSRKIIAMRQ*LYRQDVYNEHSTGRHSADTAIPGAS 312
           Y+ SL R +IA+   +  + +  EH     S  TAIP A+
Sbjct: 253 YLSSLIRSVIALHNLINNKMLNKEHEKAEDSKPTAIPSAA 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,231,167
Number of Sequences: 37544
Number of extensions: 489848
Number of successful extensions: 979
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5000508548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)