Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_A09_e161_01.seq
(1550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.016
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 34 0.27
SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18) 33 0.47
SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.47
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.47
SB_19065| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.47
SB_1571| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-16) 33 0.62
SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44) 33 0.81
SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.81
SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0) 32 1.1
SB_45463| Best HMM Match : zf-C2H2 (HMM E-Value=0) 32 1.1
SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0) 32 1.1
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 32 1.4
SB_3592| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.9
SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 31 1.9
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_44860| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_43276| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 2.5
SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19) 31 2.5
SB_3590| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_3588| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 2.5
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_37978| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 4.3
SB_18526| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 4.3
SB_43175| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.7
SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16) 30 5.7
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23) 30 5.7
SB_33309| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 5.7
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.7
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 7.6
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 7.6
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36) 29 7.6
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 7.6
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15) 29 7.6
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 29 7.6
SB_29933| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 7.6
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 38.3 bits (85), Expect = 0.016
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVSTGNDVTMPPHI 748
FKC+ CG +F L LN H RIH + GVS +D T+ HI
Sbjct: 804 FKCEECGRLFRRLHQLNVHSRIHT--GEKPYVCNRCGVSFRHDSTLTMHI 851
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKR 661
FKCD CG FG L+ L H R
Sbjct: 861 FKCDECGNTFGRLSHLRKHVR 881
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 34.3 bits (75), Expect = 0.27
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 373 ATAGISYILLYNKCKYDWKNWYRNSRWNW 459
A +G Y +L +K W NW N+ WNW
Sbjct: 111 AKSGARYFVLTSKHHEGWTNWKSNTSWNW 139
>SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)
Length = 203
Score = 33.5 bits (73), Expect = 0.47
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 373 ATAGISYILLYNKCKYDWKNWYRNSRWNW 459
A +G Y +L +K W NW N WNW
Sbjct: 119 AKSGAKYFVLTSKHHEGWTNWRSNVSWNW 147
>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 33.5 bits (73), Expect = 0.47
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXD 676
+KC+VCG +F H + N H R+H+ +
Sbjct: 134 YKCNVCGKLFSHPSSRNIHLRLHSGE 159
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIH 667
FKCDVC MF + L H RIH
Sbjct: 807 FKCDVCDKMFRTRSHLRDHVRIH 829
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 33.5 bits (73), Expect = 0.47
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 593 ISFKCDVCGLMFGHLTLLNAHKRIHAXDAD 682
+S++CD CG F + L HKR+H D
Sbjct: 331 VSYRCDECGRAFACPSWLKRHKRVHGGSTD 360
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 575 QNTISNISFKCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVST 718
Q+ + CD CG MF L HKR HA + VA G++T
Sbjct: 767 QSQAEPVKHTCDECGRMFATSFWLTRHKREHAKRLEG----VAQGITT 810
>SB_19065| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 531
Score = 33.5 bits (73), Expect = 0.47
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXD 676
FKCD CG F H + N H RIH +
Sbjct: 248 FKCDECGREFNHRSHFNNHLRIHTGE 273
>SB_1571| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-16)
Length = 265
Score = 33.1 bits (72), Expect = 0.62
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 596 SFKCDVCGLMFGHLTLLNAHKRIHAXD 676
S +CDVCG +F L AHKR H+ +
Sbjct: 109 SIRCDVCGRVFPREKSLQAHKRTHSGE 135
>SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)
Length = 454
Score = 32.7 bits (71), Expect = 0.81
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVSTGNDV 730
FKC +CG F + L +HKR+H V G S + V
Sbjct: 338 FKCPICGRPFAQSSGLESHKRVHTGQKPYKCEVCERGFSHSSAV 381
>SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 425
Score = 32.7 bits (71), Expect = 0.81
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXD 676
FKCD CG F +L AH R H D
Sbjct: 289 FKCDYCGKRFAQSGVLTAHLRTHTGD 314
Score = 30.7 bits (66), Expect = 3.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIH 667
+ C+ CG F HL+ LN H R H
Sbjct: 261 YTCEFCGRAFTHLSSLNNHTRTH 283
>SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 917
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 602 KCDVCGLMFGHLTLLNAHKRIH 667
KCD CG F HL L H RIH
Sbjct: 423 KCDECGKCFTHLGALKTHLRIH 444
Score = 29.5 bits (63), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHA 670
+KCD CG F L +H RIH+
Sbjct: 506 YKCDECGKCFNQSGTLKSHLRIHS 529
>SB_45463| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 347
Score = 32.3 bits (70), Expect = 1.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 602 KCDVCGLMFGHLTLLNAHKRIHA 670
KC++CG F + LN H RIHA
Sbjct: 229 KCNICGKAFNRSSTLNTHIRIHA 251
>SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 32.3 bits (70), Expect = 1.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAH 655
FKCD CG FG+L LN+H
Sbjct: 113 FKCDECGKSFGYLHTLNSH 131
>SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 684
Score = 32.3 bits (70), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXD 676
+KCD+C F L LN H+RIH+ +
Sbjct: 366 YKCDLCEKRFTQLGHLNVHRRIHSGE 391
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 31.9 bits (69), Expect = 1.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVSTGNDVT 733
FKC +C F + + H RIH+ + V A G S + +T
Sbjct: 427 FKCHICHRRFAQSSSVTTHMRIHSGERPYKCKVCARGFSDSSTLT 471
>SB_3592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 31.9 bits (69), Expect = 1.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHA 670
+KCD CG F LN+H RIH+
Sbjct: 158 YKCDECGKCFNQSGALNSHLRIHS 181
Score = 31.9 bits (69), Expect = 1.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHA 670
+KCD CG F LN+H RIH+
Sbjct: 186 YKCDECGKCFNQSGALNSHLRIHS 209
>SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 365
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXD 676
F+C CG FGH L HK IH +
Sbjct: 225 FECLTCGKTFGHSVSLEQHKSIHTNE 250
>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 413
Score = 31.5 bits (68), Expect = 1.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 379 AGISYILLYNKCKYDWKNWYRNSRWNW 459
+G Y ++ +K W NW N WNW
Sbjct: 116 SGAKYFVITSKHHEGWTNWRSNVSWNW 142
>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 31.5 bits (68), Expect = 1.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 596 SFKCDVCGLMFGHLTLLNAHKRIHA 670
+FKC+VCG F + L+ HK IHA
Sbjct: 307 AFKCEVCGKCFKRDSHLHTHKFIHA 331
>SB_44860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 485 TSDDKTCYIAQPFSYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAHKRI 664
T+D + +I QP + L + + N + + + N KCD CG FG L H +
Sbjct: 19 TTDTQQTFIYQPKQEYFDLSSIV----NKVTHKLQNKPHKCDECGKNFGRSEHLKKHLLV 74
Query: 665 HA 670
H+
Sbjct: 75 HS 76
>SB_43276| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 426
Score = 31.1 bits (67), Expect = 2.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIH 667
+KCDVCG F + L H RIH
Sbjct: 119 YKCDVCGKCFTYSGALKTHLRIH 141
Score = 31.1 bits (67), Expect = 2.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIH 667
+KC CG F H LN+H RIH
Sbjct: 203 YKCHECGKCFTHSGALNSHLRIH 225
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHA 670
++C CG F H LN+H RIH+
Sbjct: 147 YECHECGKCFTHSGALNSHLRIHS 170
>SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19)
Length = 374
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 524 SYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAHKRIHAXD 676
S ++AL N+++ + +Q+T + FKC C F +T LN H R H +
Sbjct: 297 SESFALSNELRT--HVVQHT-NEKPFKCGFCSRTFAGITTLNNHIRTHTGE 344
>SB_3590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 31.1 bits (67), Expect = 2.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIH 667
+KC+VC F HL L H RIH
Sbjct: 218 YKCNVCDKCFTHLGALKTHLRIH 240
>SB_3588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 31.1 bits (67), Expect = 2.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIH 667
+KCDVCG F + L H RIH
Sbjct: 84 YKCDVCGKCFTYSGALKTHLRIH 106
Score = 31.1 bits (67), Expect = 2.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIH 667
+KC CG F H LN+H RIH
Sbjct: 168 YKCHECGKCFTHSGALNSHLRIH 190
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHA 670
++C CG F H LN+H RIH+
Sbjct: 112 YECHECGKCFTHSGALNSHLRIHS 135
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 584 ISNISFKCDVCGLMFGHLTLLNAHKRIHA 670
+S ++KCD CG F L AH IH+
Sbjct: 23 LSEKAYKCDECGKCFTRRAYLRAHAIIHS 51
>SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 539
Score = 31.1 bits (67), Expect = 2.5
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVS-TGNDVT 733
FKC C F H L H+RIH + T+ S GN +T
Sbjct: 437 FKCTDCDKTFSHSQYLRLHRRIHTGEKPYECTICKKRFSKQGNMIT 482
>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 30.7 bits (66), Expect = 3.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIH 667
++C +CG FG L N HK++H
Sbjct: 1064 YRCKLCGKSFGRLWSYNKHKQLH 1086
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 30.7 bits (66), Expect = 3.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXD 676
+KCD+CG F L+ HK+IH +
Sbjct: 489 YKCDICGKKFRQQGGLSIHKKIHTEE 514
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXD 676
+ C CG MFG + L H+RIH +
Sbjct: 265 YSCKYCGRMFGESSSLIMHQRIHTNE 290
>SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 30.3 bits (65), Expect = 4.3
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Frame = +2
Query: 482 TTSDDKTCYIAQPFSYNYALV--NQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAH 655
T SD+ + Q S N +A + + CDVC F L H
Sbjct: 580 TKSDETKTFAGQEVSKATMTTDANGSDVAKKPTSSASRKYRYTCDVCLKSFSRSNTLITH 639
Query: 656 KRIHAXD 676
KRIH D
Sbjct: 640 KRIHTGD 646
>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 30.3 bits (65), Expect = 4.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 602 KCDVCGLMFGHLTLLNAHKRIHAXD 676
KC++CG F LL HKR H +
Sbjct: 621 KCEICGKSFSRPWLLQGHKRSHTGE 645
>SB_37978| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 487
Score = 30.3 bits (65), Expect = 4.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 596 SFKCDVCGLMFGHLTLLNAHKRIHA 670
+FKC+ CG F H L H+ IH+
Sbjct: 402 NFKCETCGKAFTHRNTLARHQLIHS 426
>SB_18526| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 322
Score = 30.3 bits (65), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 584 ISNISFKCDVCGLMFGHLTLLNAHKRIHA 670
+S +KCD CG+ F L H RIH+
Sbjct: 45 LSEKPYKCDECGMGFNQSGALKRHLRIHS 73
>SB_43175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHA 670
FKCD CG F L H RIH+
Sbjct: 115 FKCDECGKCFNQSENLKTHLRIHS 138
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 602 KCDVCGLMFGHLTLLNAHKRIH 667
KCD CG F LN H RIH
Sbjct: 88 KCDECGKCFTESRFLNKHVRIH 109
>SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16)
Length = 284
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXDADSXIT 694
++CD+CG F L HK+IH + S ++
Sbjct: 177 YECDICGRRFRQSGTLLRHKKIHLMECPSVMS 208
>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
Length = 827
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 584 ISNISFKCDVCGLMFGHLTLLNAHKRIHAXD 676
I+ FKC CG F T LN H R H +
Sbjct: 140 INEKPFKCGFCGRSFAGATTLNNHIRTHTGE 170
>SB_33309| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 646
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 602 KCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVA 703
KC CG F H + L H RIH+ + + +V+
Sbjct: 586 KCTQCGKAFVHASNLTKHMRIHSGEKPCEMEIVS 619
>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 602 KCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVSTGNDVT 733
+C CG G T LN H +H+ + T+ + S D+T
Sbjct: 374 ECPTCGKSLGSKTDLNRHAVVHSGEKPFKCTICSKAFSQKGDLT 417
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 521 FSYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAHKRIHAXD 676
F+Y+ +LV ++ G++ ++CD+CG F + L H+R H +
Sbjct: 600 FAYSASLVKHDRVYHRGVK------PYECDICGRAFSDRSGLVKHERTHTGE 645
>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 927
Score = 29.5 bits (63), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHA 670
+ CD CG F +T L H RIH+
Sbjct: 159 YNCDECGKCFTQITHLKRHLRIHS 182
>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
Length = 651
Score = 29.5 bits (63), Expect = 7.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 602 KCDVCGLMFGHLTLLNAHK-RIHAXDADSXITVVATGV 712
KCDVCG F + LN HK R + S +TV +
Sbjct: 610 KCDVCGKGFTLASTLNTHKERTFLANHSSALTVTRPSI 647
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 29.5 bits (63), Expect = 7.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 602 KCDVCGLMFGHLTLLNAHKRIHAXD 676
KCD CG F L H RIH +
Sbjct: 763 KCDTCGKQFNSFANLKGHLRIHTGE 787
>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
Length = 930
Score = 29.5 bits (63), Expect = 7.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 251 SCRYNHCLIAIIFLDKLPIYLKKIIICHNFIYISPQ*KLKF 129
+C+ HCL + F+DKL + K + FIY S +L F
Sbjct: 56 NCQTGHCLTQLKFVDKLRVSAKGTHV--GFIYYSDNPRLSF 94
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXD 676
FKC+VC F L H RIH+ D
Sbjct: 485 FKCEVCDKSFKREDHLRVHSRIHSED 510
>SB_29933| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 420
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 584 ISNISFKCDVCGLMFGHLTLLNAHKRIH 667
+ N +KCDVCG LN H IH
Sbjct: 263 VMNKPYKCDVCGKCLTRKANLNTHLMIH 290
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,322,440
Number of Sequences: 59808
Number of extensions: 544569
Number of successful extensions: 1829
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5058981887
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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