Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A09_e161_01.seq
         (1550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    33   0.009
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    26   1.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   1.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   2.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 0.009
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVA-TGVSTG 721
           +KCDVC   F H   L+ H RIH  +     TV + T + +G
Sbjct: 148 YKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSG 189



 Score = 27.9 bits (59), Expect = 0.25
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVSTGNDVTMPPHI 748
           + CD+CG  FG+  +L  H+  H  +     T+     + G+  TM  HI
Sbjct: 232 YTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHE--TFGSKKTMELHI 279



 Score = 24.6 bits (51), Expect = 2.3
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 479 LTTSDDKT--CYIAQPFSYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNA 652
           LT  ++KT  C + Q  +++   + Q  +  +G +       ++C++CG  F     L  
Sbjct: 54  LTNIEEKTYQCLLCQK-AFDQKNLYQSHLRSHGKEG---EDPYRCNICGKTFAVPARLTR 109

Query: 653 HKRIHAXD 676
           H R H  +
Sbjct: 110 HYRTHTGE 117



 Score = 24.2 bits (50), Expect = 3.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXD 676
           ++C+ C   F     L+ H+RIH  +
Sbjct: 120 YQCEYCSKSFSVKENLSVHRRIHTKE 145


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 572 IQNTISNISFKCDVCGLMFGHLTLLNAHKRIHA 670
           ++N   +  FKC+ C     + ++LN+H + H+
Sbjct: 8   LRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHS 40


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 602 KCDVCGLMFGHLTLLNAHKRIHAXD 676
           KC +CG  F    LL  H R H  +
Sbjct: 44  KCHLCGKAFSRPWLLQGHIRTHTGE 68


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 588 QILVLSVMYVDLCLDTLHC*MHTKE 662
           Q L L+  Y+D     LHC M   E
Sbjct: 292 QTLKLATRYIDFLFQVLHCNMENTE 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 303,388
Number of Sequences: 438
Number of extensions: 5892
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54429375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)