Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A09_e161_01.seq
         (1550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1...    30   4.7  
At4g04404.1 68417.m00636 zinc finger (C2H2 type) family protein ...    29   6.2  
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ...    29   6.2  
At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein ...    29   8.2  

>At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1)
           identical to Cys2/His2-type zinc finger protein 1
           [Arabidopsis thaliana] gi|6009887|dbj|BAA85108
          Length = 245

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 599 FKCDVCGLMFGHLTLLNAHKRIHAXDADSXIT 694
           +KC VCG  F     L  HK  H    ++ IT
Sbjct: 97  YKCTVCGKSFSSYQALGGHKTSHRKPTNTSIT 128


>At4g04404.1 68417.m00636 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 230

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 584 ISNISFKCDVCGLMFG---HLTLLNAHKRIH 667
           +S+ S++C +CG  FG    L  L  H+R+H
Sbjct: 171 VSSCSYRCKICGKSFGCFQALGALGGHQRLH 201


>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 650

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 578 NTISNISFKCDVCGLMFGHLTLLNAHKRIH 667
           N  S  S KC +CG  F     L  H+RIH
Sbjct: 36  NLQSKSSHKCKICGKSFECYQALGGHQRIH 65



 Score = 29.1 bits (62), Expect = 8.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 515 QPFSYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAHKRIH 667
           Q FS  Y   +++Q  P       S+  ++C VCG +FG    L  H ++H
Sbjct: 75  QEFSEVYPRKSKLQKRPES-----SSSCYECKVCGKIFGCYRGLGGHTKLH 120


>At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein
           (ZAT10) / salt-tolerance zinc finger protein (STZ)
           identical to salt-tolerance zinc finger protein
           GB:CAA64820 GI:1565227 from [Arabidopsis thaliana];
           contains Pfam domain, PF00096: Zinc finger, C2H2 type;
           identical to cDNA  zinc finger protein STZ/ZAT10
           (STZ/ZAT10)  GI:9965730
          Length = 227

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +2

Query: 584 ISNISFKCDVCGLMFGHLTLLNAHKRIHAXDADSXITVVATGVSTGNDVT 733
           +  +S+KC VC   F     L  HK  H  +    ++      ST +  T
Sbjct: 75  VEKLSYKCSVCDKTFSSYQALGGHKASHRKNLSQTLSGGGDDHSTSSATT 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,948,105
Number of Sequences: 28952
Number of extensions: 365291
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4163871744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)