Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A08_e153_02.seq
         (1506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0107 - 843820-846335,846400-846511                               31   3.1  
03_06_0375 - 33474860-33474866,33475033-33475100,33475469-334755...    29   7.2  

>12_01_0107 - 843820-846335,846400-846511
          Length = 875

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 650 YVHFNCAALKPRQNGSGAGTLMKKTVLRHDLTCRSYKMRKYSLREECLRKLXG 808
           ++ +NC+A +   N     +    TVL H+    SYK +K ++R+  LR L G
Sbjct: 658 HIPYNCSAWE--FNSYYQSSYAGSTVLEHESLRSSYKEQKRAVRKSILRSLSG 708


>03_06_0375 -
           33474860-33474866,33475033-33475100,33475469-33475508,
           33476298-33476421,33476906-33476973,33477089-33477155,
           33477461-33477530,33477753-33477803,33477923-33477981,
           33478026-33478056,33478631-33478834
          Length = 262

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 343 DVNN*NKITDLLRGEVELR*IFVDNKISAYLY 438
           DV+  NKIT+  R +  L  +FV+ K   YLY
Sbjct: 120 DVDTGNKITERFRTDEALERVFVEEKSFTYLY 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,233,047
Number of Sequences: 37544
Number of extensions: 434140
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4826476928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)