Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A08_e153_02.seq
         (1506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3140| Best HMM Match : C1_3 (HMM E-Value=7)                         32   1.4  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        29   7.3  
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)                29   9.7  

>SB_3140| Best HMM Match : C1_3 (HMM E-Value=7)
          Length = 340

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +2

Query: 53  PGLQXIRHEXTGCEITSSSFTRNIMYSYIRYIVHDILAAFSPAY*KPLTCQLVKC----I 220
           PG        T C     +FTR  +Y+   Y VH +  A SP     L C   +C    +
Sbjct: 100 PGAHSFHCAFTQCHSLHCAFTRCTLYALRIYPVHTLCTALSPGA-HSLHCAFTRCTLYAL 158

Query: 221 YIYLIH 238
            IY +H
Sbjct: 159 RIYPVH 164


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 721 FLHECTCTAAVLPRFQSGTIKMHVFYIQPNQFSCV 617
           + H  T   A  P   SGT   H+F+  P+  SC+
Sbjct: 204 YFHSTTDQTATTPSTFSGTTSSHLFFQMPDMSSCL 238


>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
          Length = 533

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 428 HTYICS--ETSSGSSAGRVCTRQCAKCSFILYYIH 526
           H  +C+  +  +G S+  +C   C +C  I+YY+H
Sbjct: 228 HHPLCALRDAFNGVSSSIMCITGCIQCRVIIYYVH 262



 Score = 29.1 bits (62), Expect = 9.7
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 422 SLHTYICS--ETSSGSSAGRVCTRQCAKCSFILYYIH 526
           S H  +CS  +  +G S+  +C   C +   I+YY+H
Sbjct: 294 SCHFVLCSLRDAFNGVSSSSICITGCLQWRAIIYYVH 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,150,794
Number of Sequences: 59808
Number of extensions: 510183
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4882915232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)